CommandGroup
cli
CountReadKmers
cli
CountReadKmersArgs
cli
CountSliceKmers
cli
CountSliceKmersArgs
cli
Coverage
cli
CoverageArgs
cli
cache
TransformAlignmentsArgs
cli
adam
coalesce
TransformAlignmentsArgs
TransformGenotypesArgs
TransformVariantsArgs
collapse
CoverageArgs
command
TransformAlignmentsArgs
commandDescription
ADAM2Fastq
CountReadKmers
CountSliceKmers
Coverage
FlagStat
MergeShards
PrintADAM
TransformAlignments
TransformFeatures
TransformFragments
TransformGenotypes
TransformSequences
TransformSlices
TransformVariants
View
commandName
ADAM2Fastq
CountReadKmers
CountSliceKmers
Coverage
FlagStat
MergeShards
PrintADAM
TransformAlignments
TransformFeatures
TransformFragments
TransformGenotypes
TransformSequences
TransformSlices
TransformVariants
View
commands
CommandGroup
commit
About
companion
ADAM2Fastq
CountReadKmers
CountSliceKmers
Coverage
FlagStat
MergeShards
PrintADAM
TransformAlignments
TransformFeatures
TransformFragments
TransformGenotypes
TransformSequences
TransformSlices
TransformVariants
View
concatFilename
TransformAlignmentsArgs
configure
ADAMModule
cramEof
MergeShardsArgs
createReference
TransformSequencesArgs
TransformSlicesArgs