CommandGroup
cli
CountReadKmers
cli
CountReadKmersArgs
cli
CountSliceKmers
cli
CountSliceKmersArgs
cli
Coverage
cli
CoverageArgs
cli
cache
TransformAlignmentsArgs
cli
adam
coalesce
TransformAlignmentsArgs TransformGenotypesArgs TransformVariantsArgs
collapse
CoverageArgs
command
TransformAlignmentsArgs
commandDescription
ADAM2Fastq CountReadKmers CountSliceKmers Coverage FlagStat MergeShards PrintADAM TransformAlignments TransformFeatures TransformFragments TransformGenotypes TransformSequences TransformSlices TransformVariants View
commandName
ADAM2Fastq CountReadKmers CountSliceKmers Coverage FlagStat MergeShards PrintADAM TransformAlignments TransformFeatures TransformFragments TransformGenotypes TransformSequences TransformSlices TransformVariants View
commands
CommandGroup
commit
About
companion
ADAM2Fastq CountReadKmers CountSliceKmers Coverage FlagStat MergeShards PrintADAM TransformAlignments TransformFeatures TransformFragments TransformGenotypes TransformSequences TransformSlices TransformVariants View
concatFilename
TransformAlignmentsArgs
configure
ADAMModule
cramEof
MergeShardsArgs
createReference
TransformSequencesArgs TransformSlicesArgs