Class/Object

org.bdgenomics.adam.cli

Coverage

Related Docs: object Coverage | package cli

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class Coverage extends BDGSparkCommand[CoverageArgs]

Linear Supertypes
BDGSparkCommand[CoverageArgs], Logging, BDGCommand, Runnable, AnyRef, Any
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Inherited
  1. Coverage
  2. BDGSparkCommand
  3. Logging
  4. BDGCommand
  5. Runnable
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Coverage(args: CoverageArgs)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val args: CoverageArgs

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    Attributes
    protected
    Definition Classes
    Coverage → BDGSparkCommand

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. val companion: BDGCommandCompanion

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    Definition Classes
    Coverage → BDGCommand

  8. def debug(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  9. def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  10. def debug(msg: ⇒ Any): Unit

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    protected
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    Logging

  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  13. def error(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  14. def error(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    protected
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    Logging

  15. def error(msg: ⇒ Any): Unit

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    Attributes
    protected
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    Logging

  16. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
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    Annotations
    @throws( classOf[java.lang.Throwable] )

  17. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  18. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  19. def info(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  20. def info(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    protected
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    Logging

  21. def info(msg: ⇒ Any): Unit

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    protected
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    Logging

  22. def isDebugEnabled: Boolean

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    Logging

  23. def isErrorEnabled: Boolean

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    Attributes
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    Logging

  24. def isInfoEnabled: Boolean

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    Attributes
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    Logging

  25. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  26. def isTraceEnabled: Boolean

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    Attributes
    protected
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    Logging

  27. def isWarnEnabled: Boolean

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    Attributes
    protected
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    Logging

  28. def logger: Logger

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    Attributes
    protected
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    Logging

  29. def loggerName: String

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    Attributes
    protected
    Definition Classes
    Logging

  30. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  31. final def notify(): Unit

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    Definition Classes
    AnyRef

  32. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  33. def run(sc: SparkContext): Unit

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    Definition Classes
    Coverage → BDGSparkCommand

  34. def run(): Unit

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    Definition Classes
    BDGSparkCommand → Runnable

  35. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  36. def toString(): String

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    Definition Classes
    AnyRef → Any

  37. def trace(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  38. def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  39. def trace(msg: ⇒ Any): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  40. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  41. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  42. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  43. def warn(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  44. def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  45. def warn(msg: ⇒ Any): Unit

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    Attributes
    protected
    Definition Classes
    Logging

Inherited from BDGSparkCommand[CoverageArgs]

Inherited from Logging

Inherited from BDGCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

Ungrouped