org.bdgenomics.adam.cli

Adam2FastqArgs

class Adam2FastqArgs extends Args4jBase with ParquetLoadSaveArgs

Linear Supertypes
ParquetLoadSaveArgs, SaveFileArgs, LoadFileArgs, ParquetSaveArgs, SaveArgs, ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. Adam2FastqArgs
  2. ParquetLoadSaveArgs
  3. SaveFileArgs
  4. LoadFileArgs
  5. ParquetSaveArgs
  6. SaveArgs
  7. ParquetArgs
  8. ParquetRDDArgs
  9. Args4jBase
  10. AnyRef
  11. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Adam2FastqArgs()

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. var blockSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  6. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  8. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  9. var disableProjection: Boolean

  10. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  11. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  12. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  13. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  14. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  15. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  16. var inputPath: String

    Definition Classes
    LoadFileArgs

  17. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  18. var logLevel: String

    Definition Classes
    ParquetArgs

  19. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  20. final def notify(): Unit

    Definition Classes
    AnyRef

  21. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  22. var outputOriginalBaseQualities: Boolean

  23. var outputPath: String

    Definition Classes
    SaveFileArgs

  24. var outputPath2: String

  25. var pageSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  26. var persistLevel: String

  27. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  28. var repartition: Int

  29. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  30. def toString(): String

    Definition Classes
    AnyRef → Any

  31. var validationStringency: ValidationStringency

  32. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  33. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetLoadSaveArgs

Inherited from SaveFileArgs

Inherited from LoadFileArgs

Inherited from ParquetSaveArgs

Inherited from SaveArgs

Inherited from ParquetArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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