org.bdgenomics.adam.cli

PrintGenes

class PrintGenes extends BDGSparkCommand[PrintGenesArgs] with Serializable

Linear Supertypes
Serializable, Serializable, BDGSparkCommand[PrintGenesArgs], Logging, BDGCommand, Runnable, AnyRef, Any
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Inherited
  1. PrintGenes
  2. Serializable
  3. Serializable
  4. BDGSparkCommand
  5. Logging
  6. BDGCommand
  7. Runnable
  8. AnyRef
  9. Any
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Instance Constructors

  1. new PrintGenes(args: PrintGenesArgs)

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. val args: PrintGenesArgs

    Attributes
    protected
    Definition Classes
    PrintGenes → BDGSparkCommand

  5. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  6. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. val companion: PrintGenes.type

    Definition Classes
    PrintGenes → BDGCommand

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  13. def initializeMetrics(sc: SparkContext): Option[MetricsListener]

    Definition Classes
    BDGSparkCommand

  14. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  15. def isTraceEnabled(): Boolean

    Attributes
    protected
    Definition Classes
    Logging

  16. def log: Logger

    Attributes
    protected
    Definition Classes
    Logging

  17. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  18. def logDebug(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  19. def logError(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  20. def logError(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  21. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  22. def logInfo(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  23. def logName: String

    Attributes
    protected
    Definition Classes
    Logging

  24. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  25. def logTrace(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  26. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  27. def logWarning(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  28. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  29. final def notify(): Unit

    Definition Classes
    AnyRef

  30. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  31. def printGene(gene: Gene): String

  32. def printMetrics(totalTime: Long, metricsListener: Option[MetricsListener]): Unit

    Definition Classes
    BDGSparkCommand

  33. def printTranscript(transcript: Transcript): String

  34. def run(sc: SparkContext): Unit

    Definition Classes
    PrintGenes → BDGSparkCommand

  35. def run(): Unit

    Definition Classes
    BDGSparkCommand → Runnable

  36. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  37. def toString(): String

    Definition Classes
    AnyRef → Any

  38. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  39. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  40. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from BDGSparkCommand[PrintGenesArgs]

Inherited from Logging

Inherited from BDGCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

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