org.bdgenomics.adam.cli

WigFix2Bed

object WigFix2Bed extends BDGCommandCompanion

WigFix2Bed (accessible as the command "wigfix2bed" through the CLI) takes fixed wiggle file and converts it to a BED formatted file. The wiggle file is a text based format that implements run-length encoding, without any guarantees where the sync markers are. This makes it difficult to use as a "splittable" format, and necessitates processing the file locally.

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  1. final def !=(arg0: Any): Boolean

    Definition Classes
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  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. def apply(cmdLine: Array[String]): WigFix2Bed

    Definition Classes
    WigFix2Bed → BDGCommandCompanion

  5. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  6. def clone(): AnyRef

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    protected[java.lang]
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    AnyRef
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    @throws( ... )

  7. val commandDescription: String

    Definition Classes
    WigFix2Bed → BDGCommandCompanion

  8. val commandName: String

    Definition Classes
    WigFix2Bed → BDGCommandCompanion

  9. val declPattern: Regex

  10. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  11. def equals(arg0: Any): Boolean

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  12. val featPattern: Regex

  13. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  14. final def getClass(): Class[_]

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  15. def hashCode(): Int

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  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
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  17. def main(cmdLine: Array[String]): Unit

    Definition Classes
    BDGCommandCompanion

  18. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  19. final def notify(): Unit

    Definition Classes
    AnyRef

  20. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  21. final def synchronized[T0](arg0: ⇒ T0): T0

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  22. def toString(): String

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  23. final def wait(): Unit

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  24. final def wait(arg0: Long, arg1: Int): Unit

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  25. final def wait(arg0: Long): Unit

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Inherited from BDGCommandCompanion

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