MergeShards
cli
MergeShardsArgs
cli
main
ADAMMain
markDuplicates
TransformAlignmentsArgs
TransformFragmentsArgs
matchAllBits
ViewArgs
matchSomeBits
ViewArgs
maxConsensusNumber
TransformAlignmentsArgs
maxIndelSize
TransformAlignmentsArgs
maxReadsPerTarget
TransformAlignmentsArgs
maxTargetSize
TransformAlignmentsArgs
maximumLength
Fasta2ADAMArgs
maybeDedupe
TransformFragments
maybeMdTag
TransformAlignments
mdTagsFragmentSize
TransformAlignmentsArgs
mdTagsOverwrite
TransformAlignmentsArgs
mdTagsReferenceFile
TransformAlignmentsArgs
minAcceptableQuality
TransformAlignmentsArgs
mismatchAllBits
ViewArgs
mismatchSomeBits
ViewArgs