Class

org.bdgenomics.adam.cli

Reads2CoverageArgs

Related Doc: package cli

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class Reads2CoverageArgs extends Args4jBase with ParquetArgs

Linear Supertypes
ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. Reads2CoverageArgs
  2. ParquetArgs
  3. ParquetRDDArgs
  4. Args4jBase
  5. AnyRef
  6. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Reads2CoverageArgs()

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. var asSingleFile: Boolean

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  6. var blockSize: Int

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    Definition Classes
    ParquetArgs → ParquetRDDArgs

  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. var collapse: Boolean

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  9. var compressionCodec: CompressionCodecName

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    Definition Classes
    ParquetArgs → ParquetRDDArgs

  10. var disableDictionaryEncoding: Boolean

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    Definition Classes
    ParquetArgs → ParquetRDDArgs

  11. var disableFastConcat: Boolean

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  12. var doPrintUsage: Boolean

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    Definition Classes
    Args4jBase

  13. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  14. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  15. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  16. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  17. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  18. var inputPath: String

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  19. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  20. var logLevel: String

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    Definition Classes
    ParquetArgs

  21. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  22. final def notify(): Unit

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    Definition Classes
    AnyRef

  23. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  24. var onlyNegativeStrands: Boolean

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  25. var onlyPositiveStrands: Boolean

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  26. var outputPath: String

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  27. var pageSize: Int

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    Definition Classes
    ParquetArgs → ParquetRDDArgs

  28. var printMetrics: Boolean

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    Definition Classes
    Args4jBase

  29. var sortLexicographically: Boolean

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  30. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  31. def toString(): String

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    Definition Classes
    AnyRef → Any

  32. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  33. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped