DefaultHeaderLines

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. lazy val allHeaderLines: Seq[VCFCompoundHeaderLine]

   Default set of VCF header lines for INFO and GT format fields supported in ADAM.

7. lazy val alleleCount: VCFInfoHeaderLine

8. lazy val alleleFrequency: VCFInfoHeaderLine

9. lazy val allelicDepth: VCFFormatHeaderLine

10. lazy val ancestralAllele: VCFInfoHeaderLine

11. final def asInstanceOf[T0]: T0

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12. lazy val cigar: VCFInfoHeaderLine

13. def clone(): AnyRef

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    protected[java.lang]

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14. lazy val dbSnp: VCFInfoHeaderLine

15. final def eq(arg0: AnyRef): Boolean

    Definition Classes

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16. def equals(arg0: Any): Boolean

    Definition Classes

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17. def finalize(): Unit

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    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

18. lazy val fisherStrand: VCFFormatHeaderLine

19. lazy val formatHeaderLines: Seq[VCFFormatHeaderLine]

    Default set of VCF header lines for GT format fields supported in ADAM.

20. lazy val formatReadDepth: VCFFormatHeaderLine

21. lazy val forwardReadDepth: VCFInfoHeaderLine

22. lazy val genotype: VCFFormatHeaderLine

23. lazy val genotypeFilter: VCFFormatHeaderLine

24. lazy val genotypeQuality: VCFFormatHeaderLine

25. final def getClass(): Class[_]

    Definition Classes

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26. lazy val hapMap2: VCFInfoHeaderLine

27. lazy val hapMap3: VCFInfoHeaderLine

28. def hashCode(): Int

    Definition Classes

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29. lazy val infoHeaderLines: Seq[VCFInfoHeaderLine]

    Default set of VCF header lines for INFO fields supported in ADAM.

30. final def isInstanceOf[T0]: Boolean

    Definition Classes

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31. lazy val mapq0: VCFFormatHeaderLine

32. lazy val minReadDepth: VCFFormatHeaderLine

33. final def ne(arg0: AnyRef): Boolean

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34. final def notify(): Unit

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35. final def notifyAll(): Unit

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36. lazy val phaseQuality: VCFFormatHeaderLine

37. lazy val phaseSetId: VCFFormatHeaderLine

38. lazy val phredLikelihoods: VCFFormatHeaderLine

39. lazy val readDepth: VCFInfoHeaderLine

40. lazy val reverseReadDepth: VCFInfoHeaderLine

41. lazy val rmsMapq: VCFFormatHeaderLine

42. lazy val somatic: VCFInfoHeaderLine

43. lazy val strandBiasComponents: VCFFormatHeaderLine

44. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

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45. lazy val thousandGenomes: VCFInfoHeaderLine

46. def toString(): String

    Definition Classes

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47. lazy val transcriptEffects: VCFInfoHeaderLine

48. lazy val validated: VCFInfoHeaderLine

49. final def wait(): Unit

    Definition Classes

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    @throws( ... )

50. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

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51. final def wait(arg0: Long): Unit

    Definition Classes

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    @throws( ... )