org.bdgenomics.adam.converters

VariantContextConverter

object VariantContextConverter extends Serializable

Object for converting between htsjdk and ADAM VariantContexts.

Handles Variant, Genotype, Allele, and various genotype annotation conversions. Does not handle Variant annotations. Genotype annotations are annotations in the VCF GT field while Variant annotations are annotations contained in the VCF INFO field.

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