org.bdgenomics.adam.models

Attribute

case class Attribute(tag: String, tagType: TagType.Value, value: Any) extends Product with Serializable

A wrapper around the attrTuple (key) and value pair seen in many formats.

Includes the attrTuple-type explicitly, rather than embedding the corresponding information in the type of 'value', because otherwise it'd be difficult to extract the correct type for Byte and NumericSequence values.

This class is roughly analogous to htsjdk's SAMTagAndValue.

tag

The string key associated with this pair.

tagType

An enumerated value representing the type of the 'value' parameter.

value

The 'value' half of the pair.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Instance Constructors

  1. new Attribute(tag: String, tagType: TagType.Value, value: Any)

    tag

    The string key associated with this pair.

    tagType

    An enumerated value representing the type of the 'value' parameter.

    value

    The 'value' half of the pair.

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  12. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. final def notify(): Unit

    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  15. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  16. val tag: String

    The string key associated with this pair.

  17. val tagType: TagType.Value

    An enumerated value representing the type of the 'value' parameter.

  18. def toString(): String

    Definition Classes
    Attribute → AnyRef → Any

  19. val value: Any

    The 'value' half of the pair.

  20. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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