The UNMAPPED value is a convenience value, which can be used to indicate a position which is not located anywhere along the reference sequences (see, e.
The UNMAPPED value is a convenience value, which can be used to indicate a position which is not located anywhere along the reference sequences (see, e.g. its use in GenomicPositionPartitioner).
Convenience method for building a ReferencePosition.
Convenience method for building a ReferencePosition.
The name of the reference contig this locus exists on.
The position of this locus.
The strand that this locus is on.
Convenience method for building a ReferencePosition.
Convenience method for building a ReferencePosition.
The name of the reference contig this locus exists on.
The position of this locus.
Generates a reference position from a genotype.
Generates a reference position from a genotype.
Genotype from which to generate a reference position.
The reference position of this genotype.
Generates a reference position from a called variant.
Generates a reference position from a called variant.
Called variant from which to generate a reference position.
The reference position of this variant.
Generates a reference position from a read.
Generates a reference position from a read. This function generates the position from the start mapping position of the read.
Read from which to generate a reference position.
Reference position of the start position.
fivePrime
Companion object for creating and sorting ReferencePositions.