org.bdgenomics.adam.projections

GenotypeField

object GenotypeField extends FieldEnumeration

Enumeration of Genotype field names for predicates and projections.

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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  1. GenotypeField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

    An enumerated field that is part of this schema.

  2. class Val extends Value with Serializable

    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( -3501153230598116017L )

  3. abstract class Value extends Ordered[Value] with Serializable

    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( 7091335633555234129L )

  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def SchemaValue: SchemaVal

    Attributes
    protected
    Definition Classes
    FieldEnumeration

  7. final def Value(i: Int, name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  8. final def Value(name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  9. final def Value(i: Int): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  10. final def Value: Value

    Attributes
    protected
    Definition Classes
    Enumeration

  11. val alleles: SchemaVal

  12. val alternateReadDepth: SchemaVal

  13. final def apply(x: Int): Value

    Definition Classes
    Enumeration

  14. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  15. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  16. val contigName: SchemaVal

  17. val end: SchemaVal

  18. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  19. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  20. val expectedAlleleDosage: SchemaVal

  21. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  22. val genotypeLikelihoods: SchemaVal

  23. val genotypeQuality: SchemaVal

  24. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  25. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  26. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  27. final def maxId: Int

    Definition Classes
    Enumeration

  28. val minReadDepth: SchemaVal

  29. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  30. var nextId: Int

    Attributes
    protected
    Definition Classes
    Enumeration

  31. var nextName: Iterator[String]

    Attributes
    protected
    Definition Classes
    Enumeration

  32. val nonReferenceLikelihoods: SchemaVal

  33. final def notify(): Unit

    Definition Classes
    AnyRef

  34. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  35. val phaseQuality: SchemaVal

  36. val phaseSetId: SchemaVal

  37. val phased: SchemaVal

  38. val processingDescription: SchemaVal

  39. val readDepth: SchemaVal

  40. def readResolve(): AnyRef

    Attributes
    protected
    Definition Classes
    Enumeration

  41. val recordSchema: Schema

    Definition Classes
    FieldEnumeration

  42. val referenceReadDepth: SchemaVal

  43. val sampleDescription: SchemaVal

  44. val sampleId: SchemaVal

  45. val splitFromMultiAllelic: SchemaVal

  46. val start: SchemaVal

  47. val strandBiasComponents: SchemaVal

  48. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  49. def toString(): String

    Definition Classes
    Enumeration → AnyRef → Any

  50. def values: ValueSet

    Definition Classes
    Enumeration

  51. val variant: SchemaVal

  52. val variantCallingAnnotations: SchemaVal

  53. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  54. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  55. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  56. final def withName(s: String): Value

    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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