org.bdgenomics.adam.rdd.feature

GFF3OutFormatter

case class GFF3OutFormatter() extends OutFormatter[Feature] with Product with Serializable

OutFormatter that reads streaming GFF3 format.

Linear Supertypes
Product, Equals, OutFormatter[Feature], Serializable, Serializable, AnyRef, Any
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Inherited
  1. GFF3OutFormatter
  2. Product
  3. Equals
  4. OutFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Instance Constructors

  1. new GFF3OutFormatter()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  11. val gff3Parser: GFF3Parser

  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  13. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  14. final def notify(): Unit

    Definition Classes
    AnyRef

  15. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  16. def read(is: InputStream): Iterator[Feature]

    Reads features from an input stream in GFF3 format.

    Reads features from an input stream in GFF3 format.

    is

    An InputStream connected to the process we are piping from.

    returns

    Returns an iterator of Features read from the stream.

    Definition Classes
    GFF3OutFormatter → OutFormatter

  17. val stringency: ValidationStringency

  18. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  19. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from OutFormatter[Feature]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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