org.bdgenomics.adam.rdd.read

InstrumentedADAMCRAMOutputFormatHeaderLess

class InstrumentedADAMCRAMOutputFormatHeaderLess[K] extends InstrumentedOutputFormat[K, SAMRecordWritable]

Wrapper that adds instrumentation to the CRAM output format.

K

The key type. Keys are not written.

Linear Supertypes
InstrumentedOutputFormat[K, SAMRecordWritable], OutputFormat[K, SAMRecordWritable], AnyRef, Any
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Inherited
  1. InstrumentedADAMCRAMOutputFormatHeaderLess
  2. InstrumentedOutputFormat
  3. OutputFormat
  4. AnyRef
  5. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new InstrumentedADAMCRAMOutputFormatHeaderLess()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def checkOutputSpecs(context: JobContext): Unit

    Definition Classes
    InstrumentedOutputFormat → OutputFormat

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. val delegate: OutputFormat[K, SAMRecordWritable]

    Definition Classes
    InstrumentedOutputFormat

  10. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  11. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  12. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. def getOutputCommitter(context: TaskAttemptContext): OutputCommitter

    Definition Classes
    InstrumentedOutputFormat → OutputFormat

  15. def getRecordWriter(context: TaskAttemptContext): RecordWriter[K, SAMRecordWritable]

    Definition Classes
    InstrumentedOutputFormat → OutputFormat

  16. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  17. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  18. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  19. final def notify(): Unit

    Definition Classes
    AnyRef

  20. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  21. def outputFormatClass(): Class[_ <: OutputFormat[K, SAMRecordWritable]]

    Definition Classes
    InstrumentedADAMCRAMOutputFormatHeaderLess → InstrumentedOutputFormat

  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  23. def timerName(): String

    Definition Classes
    InstrumentedADAMCRAMOutputFormatHeaderLess → InstrumentedOutputFormat

  24. def toString(): String

    Definition Classes
    AnyRef → Any

  25. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  27. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from InstrumentedOutputFormat[K, SAMRecordWritable]

Inherited from OutputFormat[K, SAMRecordWritable]

Inherited from AnyRef

Inherited from Any

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