org.bdgenomics.adam.rdd.variant

VCFInFormatter

case class VCFInFormatter extends InFormatter[VariantContext, VariantContextRDD, VCFInFormatter] with Product with Serializable

Linear Supertypes
Product, Equals, InFormatter[VariantContext, VariantContextRDD, VCFInFormatter], Serializable, Serializable, AnyRef, Any
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  1. VCFInFormatter
  2. Product
  3. Equals
  4. InFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. val companion: VCFInFormatter.type

    Attributes
    protected
    Definition Classes
    VCFInFormatter → InFormatter

  9. val converter: VariantContextConverter

  10. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  13. val headerLines: Seq[VCFHeaderLine]

  14. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  15. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  16. final def notify(): Unit

    Definition Classes
    AnyRef

  17. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  18. val samples: Seq[String]

  19. val sequences: SequenceDictionary

  20. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  21. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  24. def write(os: OutputStream, iter: Iterator[VariantContext]): Unit

    Writes variant contexts to an output stream in VCF format.

    Writes variant contexts to an output stream in VCF format.

    os

    An OutputStream connected to a process we are piping to.

    iter

    An iterator of records to write.

    Definition Classes
    VCFInFormatter → InFormatter

Inherited from Product

Inherited from Equals

Inherited from InFormatter[VariantContext, VariantContextRDD, VCFInFormatter]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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