MapTargets
Timers
MarkDuplicatesInDriver
Timers
MarkReads
Timers
Match
MdTagEvent
MdTag
models
MdTagEvent
models
Mismatch
MdTagEvent
MultisampleAvroGenomicRDD
rdd
MultisampleGenomicRDD
rdd
makeFormatter
AnySAMInFormatterCompanion
BAMInFormatter
SAMInFormatter
makeIterator
ShuffleRegionJoin
makeWriter
AnySAMInFormatter
BAMInFormatter
SAMInFormatter
mapq
AlignmentRecordField
AlignmentRecord
mapq0
DefaultHeaderLines
mapq0Reads
VariantCallingAnnotationsField
VariantCallingAnnotations
markDuplicates
FragmentRDD
AlignmentRecordRDD
matches
MdTag
mateAlignmentStart
AlignmentRecordField
AlignmentRecord
mateContigName
AlignmentRecordField
AlignmentRecord
mateMapped
AlignmentRecordField
AlignmentRecord
mateNegativeStrand
AlignmentRecordField
AlignmentRecord
md5
SequenceRecord
mdTag
IncorrectMDTagException
RichAlignmentRecord
merge
ReferenceRegion
mergeFragments
NucleotideContigFragmentRDD
messages
TranscriptEffectField
TranscriptEffect
minReadDepth
DefaultHeaderLines
GenotypeField
Genotype
mismatchedBase
MdTag
mismatches
MdTag
mismatchingPositions
AlignmentRecordField
AlignmentRecord
models
adam
moveAlignment
MdTag
mqRankSum
VariantCallingAnnotationsField
VariantCallingAnnotations