ObservationAccumulatorComb
Timers
ObservationAccumulatorSeq
Timers
ObservingRead
Timers
OntologyTerm
sql
OntologyTermField
projections
OptionalPositionOrdering
models
OptionalReferenceOrdering
models
OptionalRegionOrdering
models
OutFormatter
rdd
oldCigar
AlignmentRecordField
AlignmentRecord
oldPosition
AlignmentRecordField
AlignmentRecord
ontologyTerms
FeatureField
Feature
opt
ReferenceRegion
optPartitionMap
GenericGenomicRDD
GenomicRDD
DatasetBoundNucleotideContigFragmentRDD
ParquetUnboundNucleotideContigFragmentRDD
RDDBoundNucleotideContigFragmentRDD
DatasetBoundCoverageRDD
DatasetBoundFeatureRDD
ParquetUnboundCoverageRDD
ParquetUnboundFeatureRDD
RDDBoundCoverageRDD
RDDBoundFeatureRDD
DatasetBoundFragmentRDD
ParquetUnboundFragmentRDD
RDDBoundFragmentRDD
DatasetBoundAlignmentRecordRDD
ParquetUnboundAlignmentRecordRDD
RDDBoundAlignmentRecordRDD
DatasetBoundGenotypeRDD
DatasetBoundVariantRDD
ParquetUnboundGenotypeRDD
ParquetUnboundVariantRDD
RDDBoundGenotypeRDD
RDDBoundVariantRDD
VariantContextRDD
orderingForOptionalPositions
ReferencePosition
ReferenceRegion
orderingForPositions
ReferencePosition
ReferenceRegion
org
root
origQual
AlignmentRecordField
AlignmentRecord
outputFormatClass
InstrumentedADAMBAMOutputFormat
InstrumentedADAMBAMOutputFormatHeaderLess
InstrumentedADAMCRAMOutputFormat
InstrumentedADAMCRAMOutputFormatHeaderLess
InstrumentedADAMSAMOutputFormat
InstrumentedADAMSAMOutputFormatHeaderLess
outstream
AvroSerializer
overlaps
ReferenceRegion
overlapsBy
ReferenceRegion
overlapsReferencePosition
RichAlignmentRecord