VariantContext

Value Members

1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. def apply(v: Variant, genotypes: Iterable[Genotype]): VariantContext

   Constructs an VariantContext from an Variant and Seq[Genotype] and DatabaseVariantAnnotation

   Constructs an VariantContext from an Variant and Seq[Genotype] and DatabaseVariantAnnotation

   v

   Variant which is used to construct the ReferencePosition

   genotypes

   Seq[Genotype]

   returns

   VariantContext corresponding to the Variant

7. def apply(v: Variant): VariantContext

   Constructs an VariantContext from an Variant

   Constructs an VariantContext from an Variant

   v

   Variant which is used to construct the ReferencePosition

   returns

   VariantContext corresponding to the Variant

8. final def asInstanceOf[T0]: T0

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9. def buildFromGenotypes(genotypes: Seq[Genotype]): VariantContext

   Builds a variant context off of a set of genotypes.

   Builds a variant context off of a set of genotypes. Builds variants from the genotypes.

   genotypes

   List of genotypes to build variant context from.

   returns

   A variant context corresponding to the variants and genotypes at this site.

   Note

   Genotypes must be at the same position.

10. def clone(): AnyRef

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11. final def eq(arg0: AnyRef): Boolean

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12. def equals(arg0: Any): Boolean

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13. def finalize(): Unit

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14. final def getClass(): Class[_]

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15. def hashCode(): Int

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16. final def isInstanceOf[T0]: Boolean

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17. final def ne(arg0: AnyRef): Boolean

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18. final def notify(): Unit

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19. final def notifyAll(): Unit

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20. final def synchronized[T0](arg0: ⇒ T0): T0

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21. def toString(): String

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22. final def wait(): Unit

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23. final def wait(arg0: Long, arg1: Int): Unit

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24. final def wait(arg0: Long): Unit

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