org.bdgenomics.adam.projections

AlignmentRecordField

object AlignmentRecordField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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  1. AlignmentRecordField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

    An enumerated field that is part of this schema.

  2. class Val extends Value with Serializable

    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( -3501153230598116017L )

  3. abstract class Value extends Ordered[Value] with Serializable

    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( 7091335633555234129L )

  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def SchemaValue: SchemaVal

    Attributes
    protected
    Definition Classes
    FieldEnumeration

  7. final def Value(i: Int, name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  8. final def Value(name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  9. final def Value(i: Int): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  10. final def Value: Value

    Attributes
    protected
    Definition Classes
    Enumeration

  11. final def apply(x: Int): Value

    Definition Classes
    Enumeration

  12. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  13. val attributes: SchemaVal

  14. val basesTrimmedFromEnd: SchemaVal

  15. val basesTrimmedFromStart: SchemaVal

  16. val cigar: SchemaVal

  17. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  18. val contigName: SchemaVal

  19. val duplicateRead: SchemaVal

  20. val end: SchemaVal

  21. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  22. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  23. val failedVendorQualityChecks: SchemaVal

  24. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  25. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  26. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  27. val inferredInsertSize: SchemaVal

  28. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  29. val mapq: SchemaVal

  30. val mateAlignmentStart: SchemaVal

  31. val mateContigName: SchemaVal

  32. val mateMapped: SchemaVal

  33. val mateNegativeStrand: SchemaVal

  34. final def maxId: Int

    Definition Classes
    Enumeration

  35. val mismatchingPositions: SchemaVal

  36. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  37. var nextId: Int

    Attributes
    protected
    Definition Classes
    Enumeration

  38. var nextName: Iterator[String]

    Attributes
    protected
    Definition Classes
    Enumeration

  39. final def notify(): Unit

    Definition Classes
    AnyRef

  40. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  41. val oldCigar: SchemaVal

  42. val oldPosition: SchemaVal

  43. val origQual: SchemaVal

  44. val primaryAlignment: SchemaVal

  45. val properPair: SchemaVal

  46. val qual: SchemaVal

  47. val readInFragment: SchemaVal

  48. val readMapped: SchemaVal

  49. val readName: SchemaVal

  50. val readNegativeStrand: SchemaVal

  51. val readPaired: SchemaVal

  52. def readResolve(): AnyRef

    Attributes
    protected
    Definition Classes
    Enumeration

  53. val recordGroupName: SchemaVal

  54. val recordGroupSample: SchemaVal

  55. val recordSchema: Schema

    Definition Classes
    FieldEnumeration

  56. val secondaryAlignment: SchemaVal

  57. val sequence: SchemaVal

  58. val start: SchemaVal

  59. val supplementaryAlignment: SchemaVal

  60. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  61. def toString(): String

    Definition Classes
    Enumeration → AnyRef → Any

  62. def values: ValueSet

    Definition Classes
    Enumeration

  63. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  64. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  65. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  66. final def withName(s: String): Value

    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped