org
.
bdgenomics
.
adam
.
projections
AlignmentRecordField
object
AlignmentRecordField
extends
FieldEnumeration
Linear Supertypes
FieldEnumeration
,
Enumeration
,
Serializable
,
Serializable
,
AnyRef
,
Any
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AlignmentRecordField
FieldEnumeration
Enumeration
Serializable
Serializable
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Type Members
class
SchemaVal
extends
Val
with
FieldValue
An enumerated field that is part of this schema.
class
Val
extends
Value
with
Serializable
Attributes
protected
Definition Classes
Enumeration
Annotations
@SerialVersionUID
(
-3501153230598116017L
)
abstract
class
Value
extends
Ordered
[
Value
] with
Serializable
Definition Classes
Enumeration
Annotations
@SerialVersionUID
(
7091335633555234129L
)
class
ValueSet
extends
AbstractSet
[
Value
] with
SortedSet
[
Value
] with
SortedSetLike
[
Value
,
ValueSet
] with
Serializable
Definition Classes
Enumeration
Value Members
final
def
!=
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
SchemaValue
:
SchemaVal
Attributes
protected
Definition Classes
FieldEnumeration
final
def
Value
(
i:
Int
,
name:
String
)
:
Value
Attributes
protected
Definition Classes
Enumeration
final
def
Value
(
name:
String
)
:
Value
Attributes
protected
Definition Classes
Enumeration
final
def
Value
(
i:
Int
)
:
Value
Attributes
protected
Definition Classes
Enumeration
final
def
Value
:
Value
Attributes
protected
Definition Classes
Enumeration
final
def
apply
(
x:
Int
)
:
Value
Definition Classes
Enumeration
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
val
attributes
:
SchemaVal
val
basesTrimmedFromEnd
:
SchemaVal
val
basesTrimmedFromStart
:
SchemaVal
val
cigar
:
SchemaVal
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
val
contigName
:
SchemaVal
val
duplicateRead
:
SchemaVal
val
end
:
SchemaVal
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
val
failedVendorQualityChecks
:
SchemaVal
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
def
hashCode
()
:
Int
Definition Classes
AnyRef → Any
val
inferredInsertSize
:
SchemaVal
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
val
mapq
:
SchemaVal
val
mateAlignmentStart
:
SchemaVal
val
mateContigName
:
SchemaVal
val
mateMapped
:
SchemaVal
val
mateNegativeStrand
:
SchemaVal
final
def
maxId
:
Int
Definition Classes
Enumeration
val
mismatchingPositions
:
SchemaVal
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
var
nextId
:
Int
Attributes
protected
Definition Classes
Enumeration
var
nextName
:
Iterator
[
String
]
Attributes
protected
Definition Classes
Enumeration
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
val
oldCigar
:
SchemaVal
val
oldPosition
:
SchemaVal
val
origQual
:
SchemaVal
val
primaryAlignment
:
SchemaVal
val
properPair
:
SchemaVal
val
qual
:
SchemaVal
val
readInFragment
:
SchemaVal
val
readMapped
:
SchemaVal
val
readName
:
SchemaVal
val
readNegativeStrand
:
SchemaVal
val
readPaired
:
SchemaVal
def
readResolve
()
:
AnyRef
Attributes
protected
Definition Classes
Enumeration
val
recordGroupName
:
SchemaVal
val
recordGroupSample
:
SchemaVal
val
recordSchema
:
Schema
Definition Classes
FieldEnumeration
val
secondaryAlignment
:
SchemaVal
val
sequence
:
SchemaVal
val
start
:
SchemaVal
val
supplementaryAlignment
:
SchemaVal
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
Enumeration → AnyRef → Any
def
values
:
ValueSet
Definition Classes
Enumeration
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
withName
(
s:
String
)
:
Value
Definition Classes
Enumeration
Inherited from
FieldEnumeration
Inherited from
Enumeration
Inherited from
Serializable
Inherited from
Serializable
Inherited from
AnyRef
Inherited from
Any
Ungrouped