org.bdgenomics.adam.rdd.fragment

Tab5InFormatter

object Tab5InFormatter extends InFormatterCompanion[Fragment, FragmentRDD, Tab5InFormatter] with Serializable

InFormatter companion that creates an InFormatter that writes Bowtie tab5 format.

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Serializable, Serializable, InFormatterCompanion[Fragment, FragmentRDD, Tab5InFormatter], AnyRef, Any
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  1. final def !=(arg0: AnyRef): Boolean

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  2. final def !=(arg0: Any): Boolean

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  3. final def ##(): Int

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  4. final def ==(arg0: AnyRef): Boolean

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  5. final def ==(arg0: Any): Boolean

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  6. def apply(gRdd: FragmentRDD): Tab5InFormatter

    Builds an Tab5InFormatter to write Bowtie tab5 format.

    Builds an Tab5InFormatter to write Bowtie tab5 format.

    gRdd

    GenomicRDD of Fragments. Used to get HadoopConfiguration.

    returns

    Returns a new Tab6InFormatter.

    Definition Classes
    Tab5InFormatter → InFormatterCompanion

  7. final def asInstanceOf[T0]: T0

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  8. def clone(): AnyRef

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  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. def toString(): String

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  20. final def wait(): Unit

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  21. final def wait(arg0: Long, arg1: Int): Unit

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  22. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

Inherited from InFormatterCompanion[Fragment, FragmentRDD, Tab5InFormatter]

Inherited from AnyRef

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