org.bdgenomics.adam.rdd

fragment

package fragment

Visibility
  1. Public
  2. All

Type Members

  1. case class DatasetBoundFragmentRDD extends FragmentRDD with Product with Serializable

  2. sealed abstract class FragmentRDD extends AvroRecordGroupGenomicRDD[Fragment, Fragment, FragmentRDD]

  3. class InterleavedFASTQInFormatter extends InFormatter[Fragment, FragmentRDD, InterleavedFASTQInFormatter] with Logging

  4. case class ParquetUnboundFragmentRDD extends FragmentRDD with Product with Serializable

  5. case class RDDBoundFragmentRDD extends FragmentRDD with Product with Serializable

  6. class Tab5InFormatter extends InFormatter[Fragment, FragmentRDD, Tab5InFormatter] with Logging

  7. class Tab6InFormatter extends InFormatter[Fragment, FragmentRDD, Tab6InFormatter] with Logging

Value Members

  1. object FragmentRDD extends Serializable

    Helper singleton object for building FragmentRDDs.

  2. object InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, FragmentRDD, InterleavedFASTQInFormatter] with Serializable

    InFormatter companion that creates an InFormatter that writes interleaved FASTQ.

  3. object Tab5InFormatter extends InFormatterCompanion[Fragment, FragmentRDD, Tab5InFormatter] with Serializable

    InFormatter companion that creates an InFormatter that writes Bowtie tab5 format.

  4. object Tab6InFormatter extends InFormatterCompanion[Fragment, FragmentRDD, Tab6InFormatter] with Serializable

    InFormatter companion that creates an InFormatter that writes Bowtie tab6 format.

Ungrouped