Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written.
Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written. True indicates to write the original qualities. The default is false.
Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair.
Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair. Default is false (no suffixes).
Builds an AlignmentRecordRDD without a partition map.
Builds an AlignmentRecordRDD without a partition map.
The underlying AlignmentRecord RDD.
The sequence dictionary for the RDD.
The record group dictionary for the RDD.
A new AlignmentRecordRDD.
Builds an AlignmentRecordRDD for unaligned reads.
Builds an AlignmentRecordRDD for unaligned reads.
The underlying AlignmentRecord RDD.
A new AlignmentRecordRDD.