org.bdgenomics.adam.sql

Variant

class Variant extends Product

Linear Supertypes
Product, Equals, AnyRef, Any
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  1. Variant
  2. Product
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Instance Constructors

  1. new Variant(contigName: Option[String], start: Option[Long], end: Option[Long], names: Seq[String], splitFromMultiAllelic: Option[Boolean], referenceAllele: Option[String], alternateAllele: Option[String], quality: Option[Double], filtersApplied: Option[Boolean], filtersPassed: Option[Boolean], filtersFailed: Seq[String], annotation: Option[VariantAnnotation])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. val alternateAllele: Option[String]

  7. val annotation: Option[VariantAnnotation]

  8. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  9. def canEqual(that: Any): Boolean

    Definition Classes
    Variant → Equals

  10. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  11. val contigName: Option[String]

  12. val end: Option[Long]

  13. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  14. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  15. val filtersApplied: Option[Boolean]

  16. val filtersFailed: Seq[String]

  17. val filtersPassed: Option[Boolean]

  18. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  19. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  20. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  21. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  22. val names: Seq[String]

  23. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  24. final def notify(): Unit

    Definition Classes
    AnyRef

  25. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  26. def productArity: Int

    Definition Classes
    Variant → Product

  27. def productElement(i: Int): Any

    Definition Classes
    Variant → Product

  28. def productIterator: Iterator[Any]

    Definition Classes
    Product

  29. def productPrefix: String

    Definition Classes
    Product

  30. val quality: Option[Double]

  31. val referenceAllele: Option[String]

  32. val splitFromMultiAllelic: Option[Boolean]

  33. val start: Option[Long]

  34. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  35. def toAvro: formats.avro.Variant

  36. def toString(): String

    Definition Classes
    AnyRef → Any

  37. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  38. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  39. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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