Class

org.bdgenomics.adam.io

FastqRecordReader

Related Doc: package io

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abstract class FastqRecordReader extends RecordReader[Void, Text]

Linear Supertypes
RecordReader[Void, Text], Closeable, AutoCloseable, AnyRef, Any
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Inherited
  1. FastqRecordReader
  2. RecordReader
  3. Closeable
  4. AutoCloseable
  5. AnyRef
  6. Any
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Visibility
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Instance Constructors

  1. new FastqRecordReader(conf: Configuration, split: FileSplit)

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    Attributes
    protected[org.bdgenomics.adam.io]

Abstract Value Members

  1. abstract def checkBuffer(bufferLength: Int, buffer: Text): Boolean

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    Attributes
    protected[org.bdgenomics.adam.io]

  2. abstract def next(value: Text): Boolean

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    Attributes
    protected[org.bdgenomics.adam.io]

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def close(): Unit

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    Definition Classes
    FastqRecordReader → RecordReader → Closeable → AutoCloseable

  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def equals(arg0: Any): Boolean

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    AnyRef → Any

  9. def finalize(): Unit

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    protected[java.lang]
    Definition Classes
    AnyRef
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    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  11. final def getCurrentKey(): Void

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    Definition Classes
    FastqRecordReader → RecordReader

  12. final def getCurrentValue(): Text

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    Definition Classes
    FastqRecordReader → RecordReader

  13. final def getProgress(): Float

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    Definition Classes
    FastqRecordReader → RecordReader

  14. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  15. final def initialize(split: InputSplit, context: TaskAttemptContext): Unit

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    Definition Classes
    FastqRecordReader → RecordReader

  16. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  17. final def lowLevelFastqRead(readName: Text, value: Text): Boolean

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    Attributes
    protected[org.bdgenomics.adam.io]

  18. final def makePositionMessage(): String

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    Attributes
    protected[org.bdgenomics.adam.io]

  19. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  20. final def nextKeyValue(): Boolean

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    Definition Classes
    FastqRecordReader → RecordReader

  21. final def notify(): Unit

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    Definition Classes
    AnyRef

  22. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  23. final def positionAtFirstRecord(stream: FSDataInputStream, codec: CompressionCodec): Int

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    Attributes
    protected[org.bdgenomics.adam.io]

  24. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  25. def toString(): String

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  26. final def wait(): Unit

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    Annotations
    @throws( ... )

  27. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

  28. final def wait(arg0: Long): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

Inherited from RecordReader[Void, Text]

Inherited from Closeable

Inherited from AutoCloseable

Inherited from AnyRef

Inherited from Any

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