effects
TranscriptEffectField TranscriptEffect
empty
ReadGroupDictionary SequenceDictionary
emptyFn
FullOuterShuffleRegionJoin InnerShuffleRegionJoin InnerShuffleRegionJoinAndGroupByLeft LeftOuterShuffleRegionJoin LeftOuterShuffleRegionJoinAndGroupByLeft RightOuterShuffleRegionJoinAndGroupByLeft ShuffleRegionJoin
encoder
AvroSerializer
end
Coverage MdTag ReferenceRegion AlignmentField FeatureField GenotypeField SliceField VariantField Alignment Feature Genotype Slice Variant VariantContext
equals
MdTag ReadGroup SequenceDictionary SequenceRecord RichVariant
errorProbabilityToPhred
PhredUtils
exonId
FeatureField Feature
expectedAlleleDosage
GenotypeField Genotype
extract
SliceDataset IndexedFastaFile ReferenceContigMap ReferenceFile TwoBitFile
extractRegions
SliceDataset