effects
TranscriptEffectField
TranscriptEffect
empty
ReadGroupDictionary
SequenceDictionary
emptyFn
FullOuterShuffleRegionJoin
InnerShuffleRegionJoin
InnerShuffleRegionJoinAndGroupByLeft
LeftOuterShuffleRegionJoin
LeftOuterShuffleRegionJoinAndGroupByLeft
RightOuterShuffleRegionJoinAndGroupByLeft
ShuffleRegionJoin
encoder
AvroSerializer
end
Coverage
MdTag
ReferenceRegion
AlignmentField
FeatureField
GenotypeField
SliceField
VariantField
Alignment
Feature
Genotype
Slice
Variant
VariantContext
equals
MdTag
ReadGroup
SequenceDictionary
SequenceRecord
RichVariant
errorProbabilityToPhred
PhredUtils
exonId
FeatureField
Feature
expectedAlleleDosage
GenotypeField
Genotype
extract
SliceDataset
IndexedFastaFile
ReferenceContigMap
ReferenceFile
TwoBitFile
extractRegions
SliceDataset