FASTAInFormatter

FASTA_LINE_WIDTH

FASTQInFormatter

FastqInputFormat

FastqRecordReader

Feature

FeatureDataset

FeatureField

FieldEnumeration

FieldValue

FileExtensions

Filter

Float

Fragment

FragmentDataset

FragmentField

FullOuterShuffleRegionJoin

failedVendorQualityChecks

feature

featureHeaders

featureId

featureType

featuresToAlignmentsConversionFn

featuresToAlignmentsDatasetConversionFn

featuresToCoverageConversionFn

featuresToCoverageDatasetConversionFn

featuresToFeaturesConversionFn

featuresToFragmentsConversionFn

featuresToFragmentsDatasetConversionFn

featuresToGenotypesConversionFn

featuresToGenotypesDatasetConversionFn

featuresToReadsConversionFn

featuresToReadsDatasetConversionFn

featuresToSequencesConversionFn

featuresToSequencesDatasetConversionFn

featuresToSlicesConversionFn

featuresToSlicesDatasetConversionFn

featuresToVariantContextConversionFn

featuresToVariantsConversionFn

featuresToVariantsDatasetConversionFn

filePath

filterByAlternateReadDepth

filterByAttribute

filterByMappingQuality

filterByOverlappingRegion

filterByOverlappingRegions

filterByQuality

filterByReadDepth

filterByReferenceReadDepth

filterByScore

filterDuplicateReads

filterIndels

filterMultipleNucleotideVariants

filterNoCalls

filterSingleNucleotideVariants

filterToExon

filterToExons

filterToFeatureType

filterToFeatureTypes

filterToFiltersPassed

filterToGene

filterToGenes

filterToIndels

filterToMultipleNucleotideVariants

filterToParent

filterToParents

filterToPrimaryAlignments

filterToReadGroup

filterToReadGroups

filterToReferenceName

filterToReferenceNames

filterToSample

filterToSamples

filterToSingleNucleotideVariants

filterToTranscript

filterToTranscripts

filterUnalignedReads

filterUnpairedReads

filtersApplied

filtersFailed

filtersPassed

finalizeHits

findConsensus

fisherStrand

fisherStrandBiasPValue

fivePrimePosition

fivePrimeReferencePosition

flagStat

flankAdjacent

flatten

flattenRddByRegions

flowOrder

foreach

formatHeaderLines

formatReadDepth

forwardReadDepth

fragment

fragmentsToAlignmentsConversionFn

fragmentsToAlignmentsDatasetConversionFn

fragmentsToCoverageConversionFn

fragmentsToCoverageDatasetConversionFn

fragmentsToFeaturesConversionFn

fragmentsToFeaturesDatasetConversionFn

fragmentsToFragmentsConversionFn

fragmentsToGenotypesConversionFn

fragmentsToGenotypesDatasetConversionFn

fragmentsToReadsConversionFn

fragmentsToReadsDatasetConversionFn

fragmentsToSequencesConversionFn

fragmentsToSequencesDatasetConversionFn

fragmentsToSlicesConversionFn

fragmentsToSlicesDatasetConversionFn

fragmentsToVariantContextConversionFn

fragmentsToVariantsConversionFn

fragmentsToVariantsDatasetConversionFn

frame

fromADAMReference

fromAvro

fromGenomicRange

fromKnownIndels

fromModel

fromReads

fromReadsWithSmithWaterman

fromSAMHeader

fromSAMSequenceDictionary

fromSAMSequenceRecord

fromSequence

fromSlice

fromStart

fromString

fromVCFHeader

fullOuterShuffleRegionJoin