Match
MdTagEvent
MdTag
models
MdTagEvent
models
Mismatch
MdTagEvent
MultisampleAvroGenomicDataset
rdd
MultisampleGenomicDataset
rdd
makeFormatter
AnySAMInFormatterCompanion
BAMInFormatter
SAMInFormatter
makeIterator
ShuffleRegionJoin
makePositionMessage
FastqRecordReader
makeWriter
AnySAMInFormatter
BAMInFormatter
SAMInFormatter
mappingQuality
AlignmentField
Alignment
mapq0
DefaultHeaderLines
mapq0Reads
VariantCallingAnnotationsField
VariantCallingAnnotations
markDuplicates
FragmentDataset
AlignmentDataset
matches
MdTag
mateAlignmentStart
AlignmentField
Alignment
mateMapped
AlignmentField
Alignment
mateNegativeStrand
AlignmentField
Alignment
mateReferenceName
AlignmentField
Alignment
md5
SequenceRecord
ReferenceField
Reference
mdTag
IncorrectMDTagException
RichAlignment
merge
ReferenceRegion
SliceDataset
messages
TranscriptEffectField
TranscriptEffect
minReadDepth
DefaultHeaderLines
GenotypeField
Genotype
minValue
PhredUtils
mismatchedBase
MdTag
mismatches
MdTag
mismatchingPositions
AlignmentField
Alignment
models
adam
moveAlignment
MdTag
mqRankSum
VariantCallingAnnotationsField
VariantCallingAnnotations