OntologyTerm
sql
OntologyTermField
projections
OptionalPositionOrdering
models
OptionalReferenceOrdering
models
OptionalRegionOrdering
models
OutFormatter
rdd
ontologyTerms
FeatureField Feature
opt
ReferenceRegion
optHeaderLines
VCFOutFormatter
optLookbackPartitions
DatasetBoundGenomicDataset DatasetBoundCoverageDataset DatasetBoundFeatureDataset DatasetBoundFragmentDataset DatasetBoundAlignmentDataset DatasetBoundReadDataset DatasetBoundSequenceDataset DatasetBoundSliceDataset DatasetBoundGenotypeDataset DatasetBoundVariantContextDataset DatasetBoundVariantDataset
optPartitionBinSize
DatasetBoundGenomicDataset DatasetBoundCoverageDataset DatasetBoundFeatureDataset DatasetBoundFragmentDataset DatasetBoundAlignmentDataset DatasetBoundReadDataset DatasetBoundSequenceDataset DatasetBoundSliceDataset DatasetBoundGenotypeDataset DatasetBoundVariantContextDataset DatasetBoundVariantDataset
optPartitionMap
DatasetBoundGenericGenomicDataset GenomicDataset RDDBoundGenericGenomicDataset DatasetBoundCoverageDataset DatasetBoundFeatureDataset ParquetUnboundCoverageDataset ParquetUnboundFeatureDataset RDDBoundCoverageDataset RDDBoundFeatureDataset DatasetBoundFragmentDataset ParquetUnboundFragmentDataset RDDBoundFragmentDataset DatasetBoundAlignmentDataset DatasetBoundReadDataset ParquetUnboundAlignmentDataset ParquetUnboundReadDataset RDDBoundAlignmentDataset RDDBoundReadDataset DatasetBoundSequenceDataset DatasetBoundSliceDataset ParquetUnboundSequenceDataset ParquetUnboundSliceDataset RDDBoundSequenceDataset RDDBoundSliceDataset DatasetBoundGenotypeDataset DatasetBoundVariantContextDataset DatasetBoundVariantDataset ParquetUnboundGenotypeDataset ParquetUnboundVariantDataset RDDBoundGenotypeDataset RDDBoundVariantContextDataset RDDBoundVariantDataset
optSampleId
Coverage
orderingForOptionalPositions
ReferencePosition ReferenceRegion
orderingForPositions
ReferencePosition ReferenceRegion
org
root
originalCigar
AlignmentField Alignment
originalQualityScores
AlignmentField Alignment
originalStart
AlignmentField Alignment
outstream
AvroSerializer
overlaps
ReferenceRegion
overlapsBy
ReferenceRegion
overlapsReferencePosition
RichAlignment