OntologyTerm
sql
OntologyTermField
projections
OptionalPositionOrdering
models
OptionalReferenceOrdering
models
OptionalRegionOrdering
models
OutFormatter
rdd
ontologyTerms
FeatureField
Feature
opt
ReferenceRegion
optHeaderLines
VCFOutFormatter
optLookbackPartitions
DatasetBoundGenomicDataset
DatasetBoundCoverageDataset
DatasetBoundFeatureDataset
DatasetBoundFragmentDataset
DatasetBoundAlignmentDataset
DatasetBoundReadDataset
DatasetBoundSequenceDataset
DatasetBoundSliceDataset
DatasetBoundGenotypeDataset
DatasetBoundVariantContextDataset
DatasetBoundVariantDataset
optPartitionBinSize
DatasetBoundGenomicDataset
DatasetBoundCoverageDataset
DatasetBoundFeatureDataset
DatasetBoundFragmentDataset
DatasetBoundAlignmentDataset
DatasetBoundReadDataset
DatasetBoundSequenceDataset
DatasetBoundSliceDataset
DatasetBoundGenotypeDataset
DatasetBoundVariantContextDataset
DatasetBoundVariantDataset
optPartitionMap
DatasetBoundGenericGenomicDataset
GenomicDataset
RDDBoundGenericGenomicDataset
DatasetBoundCoverageDataset
DatasetBoundFeatureDataset
ParquetUnboundCoverageDataset
ParquetUnboundFeatureDataset
RDDBoundCoverageDataset
RDDBoundFeatureDataset
DatasetBoundFragmentDataset
ParquetUnboundFragmentDataset
RDDBoundFragmentDataset
DatasetBoundAlignmentDataset
DatasetBoundReadDataset
ParquetUnboundAlignmentDataset
ParquetUnboundReadDataset
RDDBoundAlignmentDataset
RDDBoundReadDataset
DatasetBoundSequenceDataset
DatasetBoundSliceDataset
ParquetUnboundSequenceDataset
ParquetUnboundSliceDataset
RDDBoundSequenceDataset
RDDBoundSliceDataset
DatasetBoundGenotypeDataset
DatasetBoundVariantContextDataset
DatasetBoundVariantDataset
ParquetUnboundGenotypeDataset
ParquetUnboundVariantDataset
RDDBoundGenotypeDataset
RDDBoundVariantContextDataset
RDDBoundVariantDataset
optSampleId
Coverage
orderingForOptionalPositions
ReferencePosition
ReferenceRegion
orderingForPositions
ReferencePosition
ReferenceRegion
org
root
originalCigar
AlignmentField
Alignment
originalQualityScores
AlignmentField
Alignment
originalStart
AlignmentField
Alignment
outstream
AvroSerializer
overlaps
ReferenceRegion
overlapsBy
ReferenceRegion
overlapsReferencePosition
RichAlignment