SingleReadBucketSerializer
SmithWatermanConstantGapScoring
SortedIntervalPartitionJoinWithVictims
sequencesToAlignmentsConversionFn
sequencesToAlignmentsDatasetConversionFn
sequencesToCoverageConversionFn
sequencesToCoverageDatasetConversionFn
sequencesToFeaturesConversionFn
sequencesToFeaturesDatasetConversionFn
sequencesToFragmentsConversionFn
sequencesToFragmentsDatasetConversionFn
sequencesToGenotypesConversionFn
sequencesToGenotypesDatasetConversionFn
sequencesToReadsConversionFn
sequencesToReadsDatasetConversionFn
sequencesToSequencesConversionFn
sequencesToSlicesConversionFn
sequencesToSlicesDatasetConversionFn
sequencesToVariantContextsConversionFn
sequencesToVariantsConversionFn
sequencesToVariantsDatasetConversionFn
setNestAnnotationInGenotypesProperty
shuffleRegionJoinAndGroupByLeft
slicesToAlignmentsConversionFn
slicesToAlignmentsDatasetConversionFn
slicesToCoverageConversionFn
slicesToCoverageDatasetConversionFn
slicesToFeaturesConversionFn
slicesToFeaturesDatasetConversionFn
slicesToFragmentsConversionFn
slicesToFragmentsDatasetConversionFn
slicesToGenotypesConversionFn
slicesToGenotypesDatasetConversionFn
slicesToReadsConversionFn
slicesToReadsDatasetConversionFn
slicesToSequencesConversionFn
slicesToSequencesDatasetConversionFn
slicesToSlicesConversionFn
slicesToVariantContextsConversionFn
slicesToVariantsConversionFn
slicesToVariantsDatasetConversionFn
sortByReferencePositionAndIndex
sparkContextToADAMContext
successProbabilityToPhred