Class

org.bdgenomics.adam.models

Attribute

Related Doc: package models

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case class Attribute(tag: String, tagType: TagType.Value, value: Any) extends Product with Serializable

A wrapper around the attrTuple (key) and value pair seen in many formats.

Includes the attrTuple-type explicitly, rather than embedding the corresponding information in the type of 'value', because otherwise it'd be difficult to extract the correct type for Byte and NumericSequence values.

This class is roughly analogous to htsjdk's SAMTagAndValue.

tag

The string key associated with this pair.

tagType

An enumerated value representing the type of the 'value' parameter.

value

The 'value' half of the pair.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. Attribute
  2. Serializable
  3. Serializable
  4. Product
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Visibility
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Instance Constructors

  1. new Attribute(tag: String, tagType: TagType.Value, value: Any)

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    tag

    The string key associated with this pair.

    tagType

    An enumerated value representing the type of the 'value' parameter.

    value

    The 'value' half of the pair.

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  7. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  8. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  9. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  10. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  11. final def notify(): Unit

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    Definition Classes
    AnyRef
  12. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  13. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  14. val tag: String

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    The string key associated with this pair.

  15. val tagType: TagType.Value

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    An enumerated value representing the type of the 'value' parameter.

  16. def toString(): String

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    Definition Classes
    Attribute → AnyRef → Any
  17. val value: Any

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    The 'value' half of the pair.

  18. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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