GenotypeField

Type Members

class SchemaVal extends Val with FieldValue

An enumerated field that is part of this schema.
An enumerated field that is part of this schema.

Definition Classes
FieldEnumeration
class Val extends Value with Serializable

Attributes
protected
Definition Classes
Enumeration
Annotations
@SerialVersionUID()
abstract class Value extends Ordered[Value] with Serializable

Definition Classes
Enumeration
Annotations
@SerialVersionUID()
class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

Definition Classes
Enumeration

Value Members

final def !=(arg0: Any): Boolean

Definition Classes
AnyRef → Any
final def ##(): Int

Definition Classes
AnyRef → Any
final def ==(arg0: Any): Boolean

Definition Classes
AnyRef → Any
final def SchemaValue: SchemaVal

Attributes
protected
Definition Classes
FieldEnumeration
final def Value(i: Int, name: String): Value

Attributes
protected
Definition Classes
Enumeration
final def Value(name: String): Value

Attributes
protected
Definition Classes
Enumeration
final def Value(i: Int): Value

Attributes
protected
Definition Classes
Enumeration
final def Value: Value

Attributes
protected
Definition Classes
Enumeration
val alleles: SchemaVal
val alternateReadDepth: SchemaVal
final def apply(x: Int): Value

Definition Classes
Enumeration
final def asInstanceOf[T0]: T0

Definition Classes
Any
def clone(): AnyRef

Attributes
protected[java.lang]
Definition Classes
AnyRef
Annotations
@throws( ... )
val end: SchemaVal
final def eq(arg0: AnyRef): Boolean

Definition Classes
AnyRef
def equals(arg0: Any): Boolean

Definition Classes
AnyRef → Any
val expectedAlleleDosage: SchemaVal
def finalize(): Unit

Attributes
protected[java.lang]
Definition Classes
AnyRef
Annotations
@throws( classOf[java.lang.Throwable] )
val genotypeLikelihoods: SchemaVal
val genotypeQuality: SchemaVal
final def getClass(): Class[_]

Definition Classes
AnyRef → Any
def hashCode(): Int

Definition Classes
AnyRef → Any
final def isInstanceOf[T0]: Boolean

Definition Classes
Any
final def maxId: Int

Definition Classes
Enumeration
val minReadDepth: SchemaVal
final def ne(arg0: AnyRef): Boolean

Definition Classes
AnyRef
var nextId: Int

Attributes
protected
Definition Classes
Enumeration
var nextName: Iterator[String]

Attributes
protected
Definition Classes
Enumeration
val nonReferenceLikelihoods: SchemaVal
final def notify(): Unit

Definition Classes
AnyRef
final def notifyAll(): Unit

Definition Classes
AnyRef
val phaseQuality: SchemaVal
val phaseSetId: SchemaVal
val phased: SchemaVal
val processingDescription: SchemaVal
val readDepth: SchemaVal
def readResolve(): AnyRef

Attributes
protected
Definition Classes
Enumeration
val recordSchema: Schema

The schema that this enumeration represents.
The schema that this enumeration represents.

Definition Classes
FieldEnumeration
val referenceName: SchemaVal
val referenceReadDepth: SchemaVal
val sampleDescription: SchemaVal
val sampleId: SchemaVal
val splitFromMultiAllelic: SchemaVal
val start: SchemaVal
val strandBiasComponents: SchemaVal
final def synchronized[T0](arg0: ⇒ T0): T0

Definition Classes
AnyRef
def toString(): String

Definition Classes
Enumeration → AnyRef → Any
def values: ValueSet

Definition Classes
Enumeration
val variant: SchemaVal
val variantCallingAnnotations: SchemaVal
final def wait(): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )
final def wait(arg0: Long, arg1: Int): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )
final def wait(arg0: Long): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )
final def withName(s: String): Value

Definition Classes
Enumeration

Related Doc: package projections

object GenotypeField extends FieldEnumeration

Type Members

class SchemaVal extends Val with FieldValue

class Val extends Value with Serializable

abstract class Value extends Ordered[Value] with Serializable

class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

Value Members

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

final def SchemaValue: SchemaVal

final def Value(i: Int, name: String): Value

final def Value(name: String): Value

final def Value(i: Int): Value

final def Value: Value

val alleles: SchemaVal

val alternateReadDepth: SchemaVal

final def apply(x: Int): Value

final def asInstanceOf[T0]: T0

def clone(): AnyRef

val end: SchemaVal

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

val expectedAlleleDosage: SchemaVal

def finalize(): Unit

val genotypeLikelihoods: SchemaVal

val genotypeQuality: SchemaVal

final def getClass(): Class[_]

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

final def maxId: Int

val minReadDepth: SchemaVal

final def ne(arg0: AnyRef): Boolean

var nextId: Int

var nextName: Iterator[String]

val nonReferenceLikelihoods: SchemaVal

final def notify(): Unit

final def notifyAll(): Unit

val phaseQuality: SchemaVal

val phaseSetId: SchemaVal

val phased: SchemaVal

val processingDescription: SchemaVal

val readDepth: SchemaVal

def readResolve(): AnyRef

val recordSchema: Schema

val referenceName: SchemaVal

val referenceReadDepth: SchemaVal

val sampleDescription: SchemaVal

val sampleId: SchemaVal

val splitFromMultiAllelic: SchemaVal

val start: SchemaVal

val strandBiasComponents: SchemaVal

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

def values: ValueSet

val variant: SchemaVal

val variantCallingAnnotations: SchemaVal

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

final def withName(s: String): Value

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped