Class

org.bdgenomics.adam.rdd

RightOuterTreeRegionJoinAndGroupByRight

Related Doc: package rdd

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case class RightOuterTreeRegionJoinAndGroupByRight[T, U]()(implicit evidence$7: ClassTag[T], evidence$8: ClassTag[U]) extends RegionJoin[T, U, Iterable[T], U] with TreeRegionJoin[T, U, Iterable[T], U] with Product with Serializable

Performs a right outer region join, followed logically by grouping by the right value. This is implemented without any shuffling; the join naturally returns values on the left grouped by the right value. In this implementation, empty collections on the left side of the join are kept.

Linear Supertypes
Product, Equals, TreeRegionJoin[T, U, Iterable[T], U], RegionJoin[T, U, Iterable[T], U], Serializable, Serializable, AnyRef, Any
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  1. RightOuterTreeRegionJoinAndGroupByRight
  2. Product
  3. Equals
  4. TreeRegionJoin
  5. RegionJoin
  6. Serializable
  7. Serializable
  8. AnyRef
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Instance Constructors

  1. new RightOuterTreeRegionJoinAndGroupByRight()(implicit arg0: ClassTag[T], arg1: ClassTag[U])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    AnyRef → Any
  2. final def ##(): Int

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    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

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    Any
  5. def broadcastAndJoin(tree: IntervalArray[ReferenceRegion, T], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

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  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean

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  8. def finalize(): Unit

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    protected[java.lang]
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    AnyRef
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    @throws( classOf[java.lang.Throwable] )
  9. final def getClass(): Class[_]

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    AnyRef → Any
  10. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  11. def join(broadcastTree: Broadcast[IntervalArray[ReferenceRegion, T]], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

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  12. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  13. final def notify(): Unit

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  14. final def notifyAll(): Unit

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  15. def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

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    Performs an inner join between two RDDs, followed by a groupBy on the right object.

    Performs an inner join between two RDDs, followed by a groupBy on the right object.

    baseRDD

    The 'left' side of the join

    joinedRDD

    The 'right' side of the join

    returns

    An RDD of pairs (Iterable[x], y), where the Iterable[x] is from baseRDD, y is from joinedRDD, and all values in the Iterable[x] are aligned at regions that overlap the region corresponding to y. If the iterable is empty, the key-value pair is NOT filtered out.

    Definition Classes
    RightOuterTreeRegionJoinAndGroupByRightRegionJoin
  16. final def synchronized[T0](arg0: ⇒ T0): T0

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  17. final def wait(): Unit

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    @throws( ... )
  18. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )
  19. final def wait(arg0: Long): Unit

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Inherited from Product

Inherited from Equals

Inherited from TreeRegionJoin[T, U, Iterable[T], U]

Inherited from RegionJoin[T, U, Iterable[T], U]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped