feature

Type Members

1. case class BEDInFormatter extends InFormatter[Feature, Feature, FeatureDataset, BEDInFormatter] with Product with Serializable

   

2. case class BEDOutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable

   

   OutFormatter that reads streaming BED format.

   OutFormatter that reads streaming BED format.

   stringency

   Validation stringency. Defaults to ValidationStringency.STRICT.

3. abstract class CoverageDataset extends MultisampleGenomicDataset[Coverage, Coverage, CoverageDataset] with GenomicDataset[Coverage, Coverage, CoverageDataset]

   

4. case class DatasetBoundCoverageDataset extends CoverageDataset with DatasetBoundGenomicDataset[Coverage, Coverage, CoverageDataset] with Product with Serializable

   

5. case class DatasetBoundFeatureDataset extends FeatureDataset with DatasetBoundGenomicDataset[Feature, Feature, FeatureDataset] with Product with Serializable

   

6. sealed abstract class FeatureDataset extends AvroGenomicDataset[Feature, Feature, FeatureDataset] with MultisampleGenomicDataset[Feature, Feature, FeatureDataset]

   

7. case class GFF3InFormatter extends InFormatter[Feature, Feature, FeatureDataset, GFF3InFormatter] with Product with Serializable

   

8. case class GFF3OutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable

   

   OutFormatter that reads streaming GFF3 format.

   OutFormatter that reads streaming GFF3 format.

   stringency

   Validation stringency. Defaults to ValidationStringency.STRICT.

9. case class GTFInFormatter extends InFormatter[Feature, Feature, FeatureDataset, GTFInFormatter] with Product with Serializable

   

10. case class GTFOutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable

    

    OutFormatter that reads streaming GTF format.

    OutFormatter that reads streaming GTF format.

    stringency

    Validation stringency. Defaults to ValidationStringency.STRICT.

11. case class NarrowPeakInFormatter extends InFormatter[Feature, Feature, FeatureDataset, NarrowPeakInFormatter] with Product with Serializable

    

12. case class NarrowPeakOutFormatter() extends OutFormatter[Feature] with Product with Serializable

    

    OutFormatter that reads streaming NarrowPeak format.

13. case class ParquetUnboundCoverageDataset extends CoverageDataset with Product with Serializable

    

14. case class ParquetUnboundFeatureDataset extends FeatureDataset with Product with Serializable

    

15. case class RDDBoundCoverageDataset extends CoverageDataset with Product with Serializable

    

16. case class RDDBoundFeatureDataset extends FeatureDataset with Product with Serializable