Class/Object

org.bdgenomics.adam.rdd.fragment

InterleavedFASTQInFormatter

Related Docs: object InterleavedFASTQInFormatter | package fragment

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class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging

Linear Supertypes
Logging, InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter], Serializable, Serializable, AnyRef, Any
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Inherited
  1. InterleavedFASTQInFormatter
  2. Logging
  3. InFormatter
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Value Members

  1. final def !=(arg0: Any): Boolean

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    AnyRef → Any
  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    protected[java.lang]
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  6. val companion: InterleavedFASTQInFormatter.type

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    InterleavedFASTQInFormatterInFormatter
  7. def debug(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Logging
  8. def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit

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  9. def debug(msg: ⇒ Any): Unit

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  10. final def eq(arg0: AnyRef): Boolean

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  11. def equals(arg0: Any): Boolean

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  12. def error(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Logging
  13. def error(msg: ⇒ Any, t: ⇒ Throwable): Unit

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  14. def error(msg: ⇒ Any): Unit

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  15. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )
  16. final def getClass(): Class[_]

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  17. def hashCode(): Int

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  18. def info(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Logging
  19. def info(msg: ⇒ Any, t: ⇒ Throwable): Unit

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  20. def info(msg: ⇒ Any): Unit

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  21. def isDebugEnabled: Boolean

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  22. def isErrorEnabled: Boolean

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  23. def isInfoEnabled: Boolean

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  24. final def isInstanceOf[T0]: Boolean

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  25. def isTraceEnabled: Boolean

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  26. def isWarnEnabled: Boolean

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  27. def logger: Logger

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  28. def loggerName: String

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    Logging
  29. final def ne(arg0: AnyRef): Boolean

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  30. final def notify(): Unit

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  31. final def notifyAll(): Unit

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  32. final def synchronized[T0](arg0: ⇒ T0): T0

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  33. def toString(): String

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  34. def trace(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Logging
  35. def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit

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  36. def trace(msg: ⇒ Any): Unit

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    Logging
  37. final def wait(): Unit

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  38. final def wait(arg0: Long, arg1: Int): Unit

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  39. final def wait(arg0: Long): Unit

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  40. def warn(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Logging
  41. def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Logging
  42. def warn(msg: ⇒ Any): Unit

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    Logging
  43. def write(os: OutputStream, iter: Iterator[Fragment]): Unit

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    Writes alignments to an output stream in interleaved FASTQ format.

    Writes alignments to an output stream in interleaved FASTQ format.

    os

    An OutputStream connected to a process we are piping to.

    iter

    An iterator of records to write.

    Definition Classes
    InterleavedFASTQInFormatterInFormatter

Inherited from Logging

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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