ReadDataset

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. def apply(rdd: RDD[Read], sd: SequenceDictionary): ReadDataset

   

   Builds a ReadDataset given a sequence dictionary.

   Builds a ReadDataset given a sequence dictionary.

   rdd

   The underlying Read RDD to build from.

   sd

   The sequence dictionary for this ReadDataset.

   returns

   Returns a new ReadDataset.

5. def apply(rdd: RDD[Read]): ReadDataset

   

   Builds a ReadDataset with an empty sequence dictionary.

   Builds a ReadDataset with an empty sequence dictionary.

   rdd

   The underlying Read RDD to build from.

   returns

   Returns a new ReadDataset.

6. def apply(ds: Dataset[Read], sequences: SequenceDictionary): ReadDataset

   

   A genomic dataset that wraps a dataset of Read data.

   A genomic dataset that wraps a dataset of Read data.

   ds

   A Dataset of genomic Reads.

   sequences

   The reference genome these data are aligned to.

7. def apply(ds: Dataset[Read]): ReadDataset

   

   A genomic dataset that wraps a dataset of Read data.

   A genomic dataset that wraps a dataset of Read data.

   ds

   A Dataset of genomic Reads.

8. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

9. def clone(): AnyRef

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

10. final def eq(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

11. def equals(arg0: Any): Boolean

    

    Definition Classes

    AnyRef → Any

12. def finalize(): Unit

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

13. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

14. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

15. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

16. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

17. final def notify(): Unit

    

    Definition Classes

    AnyRef

18. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

19. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

20. def toString(): String

    

    Definition Classes

    AnyRef → Any

21. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

22. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

23. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )