A converter from Alignment to SAMRecord.
A converter from Alignment to SAMRecord.
A serializable form of the SAM File Header.
A serializable form of the SAM File Header.
A dictionary describing the read groups these reads are from.
A dictionary describing the read groups these reads are from.
Writes alignments to an output stream in SAM format.
Writes alignments to an output stream in SAM format.
An OutputStream connected to a process we are piping to.
An iterator of records to write.