org.bdgenomics.adam.rdd.sequence
Hadoop configuration path to specify line width at which to hard wrap FASTA formatted sequences.
Hadoop configuration path to specify line width at which to hard wrap FASTA formatted sequences. Defaults to 60.
Builds a SequenceDataset given a sequence dictionary.
Builds a SequenceDataset given a sequence dictionary.
The underlying Sequence RDD to build from.
The sequence dictionary for this SequenceDataset.
Returns a new SequenceDataset.
Builds a SequenceDataset with an empty sequence dictionary.
Builds a SequenceDataset with an empty sequence dictionary.
The underlying Sequence RDD to build from.
Returns a new SequenceDataset.
A genomic dataset that wraps a dataset of Sequence data.
A genomic dataset that wraps a dataset of Sequence data.
A Dataset of sequences.
The reference genome these data are aligned to.
A genomic dataset that wraps a dataset of Sequence data.
A genomic dataset that wraps a dataset of Sequence data.
A Dataset of sequences.