GenotypeDataset

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. def apply(ds: Dataset[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

   

   Builds a GenotypeDataset from a Dataset.

   Builds a GenotypeDataset from a Dataset.

   ds

   The underlying Genotype Dataset.

   sequences

   The sequence dictionary for the genomic dataset.

   samples

   The samples for the genomic dataset.

   headerLines

   The header lines for the genomic dataset.

   returns

   A new GenotypeDataset.

5. def apply(ds: Dataset[Genotype], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

   

   Builds a GenotypeDataset from a Dataset.

   Builds a GenotypeDataset from a Dataset.

   ds

   The underlying Genotype Dataset.

   references

   The references for the genomic dataset.

   samples

   The samples for the genomic dataset.

   headerLines

   The header lines for the genomic dataset.

   returns

   A new GenotypeDataset.

6. def apply(ds: Dataset[Genotype]): GenotypeDataset

   

   Builds a GenotypeDataset from a Dataset.

   Builds a GenotypeDataset from a Dataset.

   ds

   The underlying Genotype Dataset.

   returns

   A new GenotypeDataset.

7. def apply(rdd: RDD[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): GenotypeDataset

   

   Builds a GenotypeDataset from an RDD.

   Builds a GenotypeDataset from an RDD.

   rdd

   The underlying Genotype RDD.

   samples

   The samples for the genomic dataset.

   headerLines

   The header lines for the genomic dataset.

   returns

   A new GenotypeDataset.

8. def apply(rdd: RDD[Genotype], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

   

   Builds a GenotypeDataset from an RDD.

   Builds a GenotypeDataset from an RDD.

   rdd

   The underlying Genotype RDD.

   references

   The references for the genomic dataset.

   samples

   The samples for the genomic dataset.

   headerLines

   The header lines for the genomic dataset.

   returns

   A new GenotypeDataset.

9. final def asInstanceOf[T0]: T0

   

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10. def clone(): AnyRef

    

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11. final def eq(arg0: AnyRef): Boolean

    

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12. def equals(arg0: Any): Boolean

    

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13. def finalize(): Unit

    

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15. def hashCode(): Int

    

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18. final def notify(): Unit

    

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19. final def notifyAll(): Unit

    

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21. def toString(): String

    

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22. final def wait(): Unit

    

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23. final def wait(arg0: Long, arg1: Int): Unit

    

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24. final def wait(arg0: Long): Unit

    

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