Class/Object

org.bdgenomics.adam.rdd.variant

VCFInFormatter

Related Docs: object VCFInFormatter | package variant

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case class VCFInFormatter extends InFormatter[VariantContext, VariantContext, VariantContextDataset, VCFInFormatter] with Product with Serializable

Linear Supertypes
Product, Equals, InFormatter[VariantContext, VariantContext, VariantContextDataset, VCFInFormatter], Serializable, Serializable, AnyRef, Any
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Inherited
  1. VCFInFormatter
  2. Product
  3. Equals
  4. InFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. val companion: VCFInFormatter.type

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    Attributes
    protected
    Definition Classes
    VCFInFormatter → InFormatter

  7. val conf: Configuration

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  8. val converter: VariantContextConverter

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  9. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  10. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

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    Definition Classes
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  12. val headerLines: Seq[VCFHeaderLine]

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  13. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  14. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  15. final def notify(): Unit

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    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

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    Definition Classes
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  17. val samples: Seq[String]

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  18. val sequences: SequenceDictionary

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  19. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
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  20. final def wait(): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

  21. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  22. final def wait(arg0: Long): Unit

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    @throws( ... )

  23. def write(os: OutputStream, iter: Iterator[VariantContext]): Unit

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    Writes variant contexts to an output stream in VCF format.

    Writes variant contexts to an output stream in VCF format.

    os

    An OutputStream connected to a process we are piping to.

    iter

    An iterator of records to write.

    Definition Classes
    VCFInFormatter → InFormatter

Inherited from Product

Inherited from Equals

Inherited from InFormatter[VariantContext, VariantContext, VariantContextDataset, VCFInFormatter]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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