Class/Object

org.bdgenomics.adam.sql

Feature

Related Docs: object Feature | package sql

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case class Feature(featureId: Option[String] = None, sampleId: Option[String] = None, name: Option[String] = None, source: Option[String] = None, featureType: Option[String] = None, referenceName: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, strand: Option[String] = None, phase: Option[Int] = None, frame: Option[Int] = None, score: Option[Double] = None, geneId: Option[String] = None, transcriptId: Option[String] = None, exonId: Option[String] = None, aliases: Seq[String] = Seq(), parentIds: Seq[String] = Seq(), target: Option[String] = None, gap: Option[String] = None, derivesFrom: Option[String] = None, notes: Seq[String] = Seq(), dbxrefs: Seq[Dbxref] = Seq(), ontologyTerms: Seq[OntologyTerm] = Seq(), circular: Option[Boolean] = None, attributes: Map[String, String] = Map()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. Feature
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new Feature(featureId: Option[String] = None, sampleId: Option[String] = None, name: Option[String] = None, source: Option[String] = None, featureType: Option[String] = None, referenceName: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, strand: Option[String] = None, phase: Option[Int] = None, frame: Option[Int] = None, score: Option[Double] = None, geneId: Option[String] = None, transcriptId: Option[String] = None, exonId: Option[String] = None, aliases: Seq[String] = Seq(), parentIds: Seq[String] = Seq(), target: Option[String] = None, gap: Option[String] = None, derivesFrom: Option[String] = None, notes: Seq[String] = Seq(), dbxrefs: Seq[Dbxref] = Seq(), ontologyTerms: Seq[OntologyTerm] = Seq(), circular: Option[Boolean] = None, attributes: Map[String, String] = Map())

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val aliases: Seq[String]

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. val attributes: Map[String, String]

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  7. def canEqual(that: Any): Boolean

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    Definition Classes
    Feature → Equals

  8. val circular: Option[Boolean]

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  9. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  10. val dbxrefs: Seq[Dbxref]

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  11. val derivesFrom: Option[String]

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  12. val end: Option[Long]

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  13. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  14. val exonId: Option[String]

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  15. val featureId: Option[String]

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  16. val featureType: Option[String]

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  17. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  18. val frame: Option[Int]

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  19. val gap: Option[String]

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  20. val geneId: Option[String]

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  21. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  22. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  23. val name: Option[String]

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  24. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  25. val notes: Seq[String]

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  26. final def notify(): Unit

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    Definition Classes
    AnyRef

  27. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  28. val ontologyTerms: Seq[OntologyTerm]

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  29. val parentIds: Seq[String]

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  30. val phase: Option[Int]

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  31. def productArity: Int

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    Definition Classes
    Feature → Product

  32. def productElement(i: Int): Any

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    Definition Classes
    Feature → Product

  33. val referenceName: Option[String]

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  34. val sampleId: Option[String]

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  35. val score: Option[Double]

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  36. val source: Option[String]

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  37. val start: Option[Long]

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  38. val strand: Option[String]

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  39. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  40. val target: Option[String]

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  41. def toAvro: formats.avro.Feature

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  42. val transcriptId: Option[String]

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  43. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  44. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  45. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped