Class/Object

org.bdgenomics.adam.sql

Slice

Related Docs: object Slice | package sql

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case class Slice(name: Option[String] = None, description: Option[String] = None, alphabet: Option[String] = None, sequence: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, strand: Option[String] = None, length: Option[Long] = None, totalLength: Option[Long] = None, index: Option[Int] = None, slices: Option[Int] = None, attributes: Map[String, String] = Map()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. Slice
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Slice(name: Option[String] = None, description: Option[String] = None, alphabet: Option[String] = None, sequence: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, strand: Option[String] = None, length: Option[Long] = None, totalLength: Option[Long] = None, index: Option[Int] = None, slices: Option[Int] = None, attributes: Map[String, String] = Map())

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val alphabet: Option[String]

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. val attributes: Map[String, String]

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  7. def canEqual(that: Any): Boolean

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    Definition Classes
    Slice → Equals

  8. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. val description: Option[String]

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  10. val end: Option[Long]

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  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  13. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  14. val index: Option[Int]

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  15. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  16. val length: Option[Long]

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  17. val name: Option[String]

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  18. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  19. final def notify(): Unit

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    Definition Classes
    AnyRef

  20. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  21. def productArity: Int

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    Definition Classes
    Slice → Product

  22. def productElement(i: Int): Any

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    Definition Classes
    Slice → Product

  23. val sequence: Option[String]

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  24. val slices: Option[Int]

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  25. val start: Option[Long]

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  26. val strand: Option[String]

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  27. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  28. def toAvro: formats.avro.Slice

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  29. val totalLength: Option[Long]

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  30. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  31. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  32. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped