org
.
bdgenomics
.
adam
.
sql
TranscriptEffect
Related Docs:
object TranscriptEffect
|
package sql
case class
TranscriptEffect
(
alternateAllele:
Option
[
String
] =
None
,
effects:
Seq
[
String
] =
Seq()
,
geneName:
Option
[
String
] =
None
,
geneId:
Option
[
String
] =
None
,
featureType:
Option
[
String
] =
None
,
featureId:
Option
[
String
] =
None
,
biotype:
Option
[
String
] =
None
,
rank:
Option
[
Int
] =
None
,
total:
Option
[
Int
] =
None
,
genomicHgvs:
Option
[
String
] =
None
,
transcriptHgvs:
Option
[
String
] =
None
,
proteinHgvs:
Option
[
String
] =
None
,
cdnaPosition:
Option
[
Int
] =
None
,
cdnaLength:
Option
[
Int
] =
None
,
cdsPosition:
Option
[
Int
] =
None
,
cdsLength:
Option
[
Int
] =
None
,
proteinPosition:
Option
[
Int
] =
None
,
proteinLength:
Option
[
Int
] =
None
,
distance:
Option
[
Int
] =
None
,
messages:
Seq
[
String
] =
Seq()
)
extends
Product
with
Serializable
Linear Supertypes
Serializable
,
Serializable
,
Product
,
Equals
,
AnyRef
,
Any
Ordering
Alphabetic
By Inheritance
Inherited
TranscriptEffect
Serializable
Serializable
Product
Equals
AnyRef
Any
Hide All
Show All
Visibility
Public
All
Instance Constructors
new
TranscriptEffect
(
alternateAllele:
Option
[
String
] =
None
,
effects:
Seq
[
String
] =
Seq()
,
geneName:
Option
[
String
] =
None
,
geneId:
Option
[
String
] =
None
,
featureType:
Option
[
String
] =
None
,
featureId:
Option
[
String
] =
None
,
biotype:
Option
[
String
] =
None
,
rank:
Option
[
Int
] =
None
,
total:
Option
[
Int
] =
None
,
genomicHgvs:
Option
[
String
] =
None
,
transcriptHgvs:
Option
[
String
] =
None
,
proteinHgvs:
Option
[
String
] =
None
,
cdnaPosition:
Option
[
Int
] =
None
,
cdnaLength:
Option
[
Int
] =
None
,
cdsPosition:
Option
[
Int
] =
None
,
cdsLength:
Option
[
Int
] =
None
,
proteinPosition:
Option
[
Int
] =
None
,
proteinLength:
Option
[
Int
] =
None
,
distance:
Option
[
Int
] =
None
,
messages:
Seq
[
String
] =
Seq()
)
Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
val
alternateAllele
:
Option
[
String
]
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
val
biotype
:
Option
[
String
]
def
canEqual
(
that:
Any
)
:
Boolean
Definition Classes
TranscriptEffect
→ Equals
val
cdnaLength
:
Option
[
Int
]
val
cdnaPosition
:
Option
[
Int
]
val
cdsLength
:
Option
[
Int
]
val
cdsPosition
:
Option
[
Int
]
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
val
distance
:
Option
[
Int
]
val
effects
:
Seq
[
String
]
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
val
featureId
:
Option
[
String
]
val
featureType
:
Option
[
String
]
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
val
geneId
:
Option
[
String
]
val
geneName
:
Option
[
String
]
val
genomicHgvs
:
Option
[
String
]
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
val
messages
:
Seq
[
String
]
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
def
productArity
:
Int
Definition Classes
TranscriptEffect
→ Product
def
productElement
(
i:
Int
)
:
Any
Definition Classes
TranscriptEffect
→ Product
val
proteinHgvs
:
Option
[
String
]
val
proteinLength
:
Option
[
Int
]
val
proteinPosition
:
Option
[
Int
]
val
rank
:
Option
[
Int
]
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toAvro
:
formats.avro.TranscriptEffect
val
total
:
Option
[
Int
]
val
transcriptHgvs
:
Option
[
String
]
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
Serializable
Inherited from
Serializable
Inherited from
Product
Inherited from
Equals
Inherited from
AnyRef
Inherited from
Any
Ungrouped