org
.
bdgenomics
.
adam
.
sql
VariantCallingAnnotations
Related Docs:
object VariantCallingAnnotations
|
package sql
case class
VariantCallingAnnotations
(
filtersApplied:
Option
[
Boolean
] =
None
,
filtersPassed:
Option
[
Boolean
] =
None
,
filtersFailed:
Seq
[
String
] =
Seq()
,
downsampled:
Option
[
Boolean
] =
None
,
baseQRankSum:
Option
[
Float
] =
None
,
fisherStrandBiasPValue:
Option
[
Float
] =
None
,
rmsMapQ:
Option
[
Float
] =
None
,
mapq0Reads:
Option
[
Int
] =
None
,
mqRankSum:
Option
[
Float
] =
None
,
readPositionRankSum:
Option
[
Float
] =
None
,
genotypePriors:
Seq
[
Float
] =
Seq()
,
genotypePosteriors:
Seq
[
Float
] =
Seq()
,
vqslod:
Option
[
Float
] =
None
,
culprit:
Option
[
String
] =
None
,
attributes:
Map
[
String
,
String
] =
Map()
)
extends
Product
with
Serializable
Linear Supertypes
Serializable
,
Serializable
,
Product
,
Equals
,
AnyRef
,
Any
Ordering
Alphabetic
By Inheritance
Inherited
VariantCallingAnnotations
Serializable
Serializable
Product
Equals
AnyRef
Any
Hide All
Show All
Visibility
Public
All
Instance Constructors
new
VariantCallingAnnotations
(
filtersApplied:
Option
[
Boolean
] =
None
,
filtersPassed:
Option
[
Boolean
] =
None
,
filtersFailed:
Seq
[
String
] =
Seq()
,
downsampled:
Option
[
Boolean
] =
None
,
baseQRankSum:
Option
[
Float
] =
None
,
fisherStrandBiasPValue:
Option
[
Float
] =
None
,
rmsMapQ:
Option
[
Float
] =
None
,
mapq0Reads:
Option
[
Int
] =
None
,
mqRankSum:
Option
[
Float
] =
None
,
readPositionRankSum:
Option
[
Float
] =
None
,
genotypePriors:
Seq
[
Float
] =
Seq()
,
genotypePosteriors:
Seq
[
Float
] =
Seq()
,
vqslod:
Option
[
Float
] =
None
,
culprit:
Option
[
String
] =
None
,
attributes:
Map
[
String
,
String
] =
Map()
)
Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
val
attributes
:
Map
[
String
,
String
]
val
baseQRankSum
:
Option
[
Float
]
def
canEqual
(
that:
Any
)
:
Boolean
Definition Classes
VariantCallingAnnotations
→ Equals
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
val
culprit
:
Option
[
String
]
val
downsampled
:
Option
[
Boolean
]
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
val
filtersApplied
:
Option
[
Boolean
]
val
filtersFailed
:
Seq
[
String
]
val
filtersPassed
:
Option
[
Boolean
]
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
val
fisherStrandBiasPValue
:
Option
[
Float
]
val
genotypePosteriors
:
Seq
[
Float
]
val
genotypePriors
:
Seq
[
Float
]
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
val
mapq0Reads
:
Option
[
Int
]
val
mqRankSum
:
Option
[
Float
]
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
def
productArity
:
Int
Definition Classes
VariantCallingAnnotations
→ Product
def
productElement
(
i:
Int
)
:
Any
Definition Classes
VariantCallingAnnotations
→ Product
val
readPositionRankSum
:
Option
[
Float
]
val
rmsMapQ
:
Option
[
Float
]
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toAvro
:
formats.avro.VariantCallingAnnotations
val
vqslod
:
Option
[
Float
]
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
Serializable
Inherited from
Serializable
Inherited from
Product
Inherited from
Equals
Inherited from
AnyRef
Inherited from
Any
Ungrouped