Class

org.bdgenomics.adam.util

ParquetFileTraversable

Related Doc: package util

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class ParquetFileTraversable[T <: IndexedRecord] extends Traversable[T]

Implements a traversable collection that is backed by a Parquet file.

Linear Supertypes
Traversable[T], GenTraversable[T], GenericTraversableTemplate[T, Traversable], TraversableLike[T, Traversable[T]], GenTraversableLike[T, Traversable[T]], Parallelizable[T, ParIterable[T]], TraversableOnce[T], GenTraversableOnce[T], FilterMonadic[T, Traversable[T]], HasNewBuilder[T, Traversable[T]], AnyRef, Any
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Inherited
  1. ParquetFileTraversable
  2. Traversable
  3. GenTraversable
  4. GenericTraversableTemplate
  5. TraversableLike
  6. GenTraversableLike
  7. Parallelizable
  8. TraversableOnce
  9. GenTraversableOnce
  10. FilterMonadic
  11. HasNewBuilder
  12. AnyRef
  13. Any
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Visibility
  1. Public
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Instance Constructors

  1. new ParquetFileTraversable(sc: SparkContext, file: String)

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    sc

    A SparkContext to use to get underlying Hadoop FileSystem config.

    file

    The path to the Parquet file to load.

  2. new ParquetFileTraversable(sc: SparkContext, file: Path)

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    sc

    A SparkContext to use to get underlying Hadoop FileSystem config.

    file

    The path to the Parquet file to load.

Type Members

  1. type Self = Traversable[T]

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    Attributes
    protected[this]
    Definition Classes
    TraversableLike
  2. class WithFilter extends FilterMonadic[A, Repr]

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    Definition Classes
    TraversableLike

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. def ++[B >: T, That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike → GenTraversableLike
  4. def ++:[B >: T, That](that: Traversable[B])(implicit bf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike
  5. def ++:[B >: T, That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike
  6. def /:[B](z: B)(op: (B, T) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  7. def :\[B](z: B)(op: (T, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  8. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  9. def addString(b: StringBuilder): StringBuilder

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    Definition Classes
    TraversableOnce
  10. def addString(b: StringBuilder, sep: String): StringBuilder

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    Definition Classes
    TraversableOnce
  11. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder

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    Definition Classes
    TraversableOnce
  12. def aggregate[B](z: ⇒ B)(seqop: (B, T) ⇒ B, combop: (B, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  13. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  14. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  15. def collect[B, That](pf: PartialFunction[T, B])(implicit bf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike → GenTraversableLike
  16. def collectFirst[B](pf: PartialFunction[T, B]): Option[B]

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    Definition Classes
    TraversableOnce
  17. def companion: GenericCompanion[Traversable]

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    Definition Classes
    Traversable → GenTraversable → GenericTraversableTemplate
  18. def copyToArray[B >: T](xs: Array[B], start: Int, len: Int): Unit

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    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  19. def copyToArray[B >: T](xs: Array[B]): Unit

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  20. def copyToArray[B >: T](xs: Array[B], start: Int): Unit

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  21. def copyToBuffer[B >: T](dest: Buffer[B]): Unit

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    Definition Classes
    TraversableOnce
  22. def count(p: (T) ⇒ Boolean): Int

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  23. def drop(n: Int): Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  24. def dropWhile(p: (T) ⇒ Boolean): Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  25. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  26. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  27. def exists(p: (T) ⇒ Boolean): Boolean

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    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  28. def filter(p: (T) ⇒ Boolean): Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  29. def filterNot(p: (T) ⇒ Boolean): Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  30. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  31. def find(p: (T) ⇒ Boolean): Option[T]

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    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  32. def flatMap[B, That](f: (T) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  33. def flatten[B](implicit asTraversable: (T) ⇒ GenTraversableOnce[B]): Traversable[B]

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    Definition Classes
    GenericTraversableTemplate
  34. def fold[A1 >: T](z: A1)(op: (A1, A1) ⇒ A1): A1

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  35. def foldLeft[B](z: B)(op: (B, T) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  36. def foldRight[B](z: B)(op: (T, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  37. def forall(p: (T) ⇒ Boolean): Boolean

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    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  38. def foreach[U](f: (T) ⇒ U): Unit

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    Runs a for loop over each record in the file, and applies a function.

    Runs a for loop over each record in the file, and applies a function.

    f

    The function to apply to each record.

    Definition Classes
    ParquetFileTraversable → GenericTraversableTemplate → TraversableLike → GenTraversableLike → TraversableOnce → GenTraversableOnce → FilterMonadic
  39. def genericBuilder[B]: Builder[B, Traversable[B]]

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    Definition Classes
    GenericTraversableTemplate
  40. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  41. def groupBy[K](f: (T) ⇒ K): Map[K, Traversable[T]]

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    Definition Classes
    TraversableLike → GenTraversableLike
  42. def hasDefiniteSize: Boolean

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    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  43. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  44. def head: T

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    Definition Classes
    TraversableLike → GenTraversableLike
  45. def headOption: Option[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  46. def init: Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  47. def inits: Iterator[Traversable[T]]

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    Definition Classes
    TraversableLike
  48. def isEmpty: Boolean

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    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  49. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  50. final def isTraversableAgain: Boolean

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    Definition Classes
    TraversableLike → GenTraversableLike → GenTraversableOnce
  51. def last: T

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    Definition Classes
    TraversableLike → GenTraversableLike
  52. def lastOption: Option[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  53. def map[B, That](f: (T) ⇒ B)(implicit bf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  54. def max[B >: T](implicit cmp: Ordering[B]): T

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  55. def maxBy[B](f: (T) ⇒ B)(implicit cmp: Ordering[B]): T

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  56. def min[B >: T](implicit cmp: Ordering[B]): T

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  57. def minBy[B](f: (T) ⇒ B)(implicit cmp: Ordering[B]): T

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  58. def mkString: String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  59. def mkString(sep: String): String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  60. def mkString(start: String, sep: String, end: String): String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  61. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  62. def newBuilder: Builder[T, Traversable[T]]

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    Attributes
    protected[this]
    Definition Classes
    GenericTraversableTemplate → HasNewBuilder
  63. def nonEmpty: Boolean

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  64. final def notify(): Unit

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    Definition Classes
    AnyRef
  65. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  66. def par: ParIterable[T]

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    Definition Classes
    Parallelizable
  67. def parCombiner: Combiner[T, ParIterable[T]]

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    Attributes
    protected[this]
    Definition Classes
    TraversableLike → Parallelizable
  68. def partition(p: (T) ⇒ Boolean): (Traversable[T], Traversable[T])

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    Definition Classes
    TraversableLike → GenTraversableLike
  69. def product[B >: T](implicit num: Numeric[B]): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  70. def reduce[A1 >: T](op: (A1, A1) ⇒ A1): A1

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  71. def reduceLeft[B >: T](op: (B, T) ⇒ B): B

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    Definition Classes
    TraversableOnce
  72. def reduceLeftOption[B >: T](op: (B, T) ⇒ B): Option[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  73. def reduceOption[A1 >: T](op: (A1, A1) ⇒ A1): Option[A1]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  74. def reduceRight[B >: T](op: (T, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  75. def reduceRightOption[B >: T](op: (T, B) ⇒ B): Option[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  76. def repr: Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  77. def reversed: List[T]

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    Attributes
    protected[this]
    Definition Classes
    TraversableOnce
  78. def scan[B >: T, That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike → GenTraversableLike
  79. def scanLeft[B, That](z: B)(op: (B, T) ⇒ B)(implicit bf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike → GenTraversableLike
  80. def scanRight[B, That](z: B)(op: (T, B) ⇒ B)(implicit bf: CanBuildFrom[Traversable[T], B, That]): That

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    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  81. def seq: Traversable[T]

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    Definition Classes
    Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce
  82. def size: Int

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  83. def slice(from: Int, until: Int): Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  84. def span(p: (T) ⇒ Boolean): (Traversable[T], Traversable[T])

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    Definition Classes
    TraversableLike → GenTraversableLike
  85. def splitAt(n: Int): (Traversable[T], Traversable[T])

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    Definition Classes
    TraversableLike → GenTraversableLike
  86. def stringPrefix: String

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    Definition Classes
    TraversableLike → GenTraversableLike
  87. def sum[B >: T](implicit num: Numeric[B]): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  88. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  89. def tail: Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  90. def tails: Iterator[Traversable[T]]

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    Definition Classes
    TraversableLike
  91. def take(n: Int): Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  92. def takeWhile(p: (T) ⇒ Boolean): Traversable[T]

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    Definition Classes
    TraversableLike → GenTraversableLike
  93. def thisCollection: Traversable[T]

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    Attributes
    protected[this]
    Definition Classes
    TraversableLike
  94. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, T, Col[T]]): Col[T]

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    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  95. def toArray[B >: T](implicit arg0: ClassTag[B]): Array[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  96. def toBuffer[B >: T]: Buffer[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  97. def toCollection(repr: Traversable[T]): Traversable[T]

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    Attributes
    protected[this]
    Definition Classes
    TraversableLike
  98. def toIndexedSeq: IndexedSeq[T]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  99. def toIterable: Iterable[T]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  100. def toIterator: Iterator[T]

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    Definition Classes
    TraversableLike → GenTraversableOnce
  101. def toList: List[T]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  102. def toMap[T, U](implicit ev: <:<[T, (T, U)]): Map[T, U]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  103. def toSeq: Seq[T]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  104. def toSet[B >: T]: Set[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  105. def toStream: Stream[T]

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    Definition Classes
    TraversableLike → GenTraversableOnce
  106. def toString(): String

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    Definition Classes
    TraversableLike → Any
  107. def toTraversable: Traversable[T]

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    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  108. def toVector: Vector[T]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  109. def transpose[B](implicit asTraversable: (T) ⇒ GenTraversableOnce[B]): Traversable[Traversable[B]]

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    Definition Classes
    GenericTraversableTemplate
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  110. def unzip[A1, A2](implicit asPair: (T) ⇒ (A1, A2)): (Traversable[A1], Traversable[A2])

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    Definition Classes
    GenericTraversableTemplate
  111. def unzip3[A1, A2, A3](implicit asTriple: (T) ⇒ (A1, A2, A3)): (Traversable[A1], Traversable[A2], Traversable[A3])

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    Definition Classes
    GenericTraversableTemplate
  112. def view(from: Int, until: Int): TraversableView[T, Traversable[T]]

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    Definition Classes
    TraversableLike
  113. def view: TraversableView[T, Traversable[T]]

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    Definition Classes
    TraversableLike
  114. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  115. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  116. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  117. def withFilter(p: (T) ⇒ Boolean): FilterMonadic[T, Traversable[T]]

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    Definition Classes
    TraversableLike → FilterMonadic

Inherited from Traversable[T]

Inherited from GenTraversable[T]

Inherited from GenericTraversableTemplate[T, Traversable]

Inherited from TraversableLike[T, Traversable[T]]

Inherited from GenTraversableLike[T, Traversable[T]]

Inherited from Parallelizable[T, ParIterable[T]]

Inherited from TraversableOnce[T]

Inherited from GenTraversableOnce[T]

Inherited from FilterMonadic[T, Traversable[T]]

Inherited from HasNewBuilder[T, Traversable[T]]

Inherited from AnyRef

Inherited from Any

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