AttributeUtils

Value Members

1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. final def asInstanceOf[T0]: T0

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7. val attrRegex: RegExp

8. def clone(): AnyRef

   Attributes

   protected[java.lang]

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9. def convertSAMTagAndValue(attr: SAMTagAndValue): Attribute

10. final def eq(arg0: AnyRef): Boolean

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11. def equals(arg0: Any): Boolean

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12. def finalize(): Unit

    Attributes

    protected[java.lang]

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13. final def getClass(): Class[_]

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14. def hashCode(): Int

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15. final def isInstanceOf[T0]: Boolean

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16. final def ne(arg0: AnyRef): Boolean

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17. final def notify(): Unit

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18. final def notifyAll(): Unit

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19. def parseAttribute(encoded: String): Attribute

    Extract the Attribute value from the corresponding String fragment stored in the Read.

    Extract the Attribute value from the corresponding String fragment stored in the Read.attributes field.

    encoded

    A three-part ':'-separated string, containing [attrTuple]:[type]:[value]

    returns

    An Attribute value which has the three, extracted and correctly-typed parts of the encoded argument.

    Exceptions thrown

    IllegalArgumentException

    if the encoded string doesn't conform to the required regular expression ([A-Z]{2}:[AifZHB]:[^\t]+)

20. def parseAttributes(tagStrings: String): Seq[Attribute]

    Parses a tab-separated string of attributes (tag:type:value) into a Seq of Attribute values.

    Parses a tab-separated string of attributes (tag:type:value) into a Seq of Attribute values.

    tagStrings

    The String to be parsed

    returns

    The parsed Attributes

21. final def synchronized[T0](arg0: ⇒ T0): T0

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22. def toString(): String

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23. final def wait(): Unit

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24. final def wait(arg0: Long, arg1: Int): Unit

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25. final def wait(arg0: Long): Unit

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