org.bdgenomics.adam.algorithms.consensus
For all reads in this region, generates the list of consensus sequences for realignment.
For all reads in this region, generates the list of consensus sequences for realignment.
Reads to generate consensus sequences from.
Consensus sequences to use for realignment.
Performs any preprocessing specific to this consensus generation algorithm, e.
Performs any preprocessing specific to this consensus generation algorithm, e.g., indel normalization.
Reads to preprocess.
Preprocessed reads.
Generates targets to add to initial set of indel realignment targets, if additional targets are necessary.
Generates targets to add to initial set of indel realignment targets, if additional targets are necessary.
Returns an option which wraps an RDD of indel realignment targets.