BAMFilteredRecordReader

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. final def ==(arg0: AnyRef): Boolean

   Definition Classes

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5. final def ==(arg0: Any): Boolean

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6. final def asInstanceOf[T0]: T0

   Definition Classes

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7. var bci: BlockCompressedInputStream

8. def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

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   Annotations

   @throws( ... )

9. def close(): Unit

   Definition Classes

   BAMFilteredRecordReader → BAMRecordReader → RecordReader → Closeable → AutoCloseable

10. var codec: BAMRecordCodec

11. final def eq(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

12. def equals(arg0: Any): Boolean

    Definition Classes

    AnyRef → Any

13. var fileStart: Long

14. def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

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    Annotations

    @throws( classOf[java.lang.Throwable] )

15. final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

16. def getCurrentKey(): LongWritable

    Definition Classes

    BAMFilteredRecordReader → BAMRecordReader → RecordReader

17. def getCurrentValue(): SAMRecordWritable

    Definition Classes

    BAMFilteredRecordReader → BAMRecordReader → RecordReader

18. def getProgress(): Float

    Definition Classes

    BAMRecordReader → RecordReader

19. def hashCode(): Int

    Definition Classes

    AnyRef → Any

20. def initialize(spl: InputSplit, ctx: TaskAttemptContext): Unit

    Definition Classes

    BAMFilteredRecordReader → BAMRecordReader → RecordReader

21. var isInitialized: Boolean

22. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

23. val key: LongWritable

24. final def ne(arg0: AnyRef): Boolean

    Definition Classes

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25. final def nextKeyValue(): Boolean

    This method gets the nextKeyValue for our RecordReader, but filters by only returning records within a specified ReferenceRegion.

    This method gets the nextKeyValue for our RecordReader, but filters by only returning records within a specified ReferenceRegion. This function is tail recursive to avoid stack overflow when predicate data can be sparse.

    Definition Classes

    BAMFilteredRecordReader → BAMRecordReader → RecordReader

    Annotations

    @tailrec()

26. final def notify(): Unit

    Definition Classes

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27. final def notifyAll(): Unit

    Definition Classes

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28. val record: SAMRecordWritable

29. var stringency: ValidationStringency

30. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

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31. def toString(): String

    Definition Classes

    AnyRef → Any

32. var virtualEnd: Long

33. final def wait(): Unit

    Definition Classes

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    Annotations

    @throws( ... )

34. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

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    Annotations

    @throws( ... )

35. final def wait(arg0: Long): Unit

    Definition Classes

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    Annotations

    @throws( ... )