org.bdgenomics.adam.projections

AlignmentRecordField

object AlignmentRecordField extends FieldEnumeration

This enumeration exist in order to reduce typo errors in the code. It needs to be kept in sync with any changes to Read.

This enumeration is necessary because Parquet needs the field string names for predicates and projections.

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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  1. AlignmentRecordField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

    Definition Classes
    FieldEnumeration

  2. class Val extends Value with Serializable

    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( -3501153230598116017L )

  3. abstract class Value extends Ordered[Value] with Serializable

    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( 7091335633555234129L )

  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def SchemaValue: SchemaVal

    Attributes
    protected
    Definition Classes
    FieldEnumeration

  7. final def Value(i: Int, name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  8. final def Value(name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  9. final def Value(i: Int): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  10. final def Value: Value

    Attributes
    protected
    Definition Classes
    Enumeration

  11. final def apply(x: Int): Value

    Definition Classes
    Enumeration

  12. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  13. val attributes: SchemaVal

  14. val cigar: SchemaVal

  15. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  16. val contig: SchemaVal

  17. val duplicateRead: SchemaVal

  18. val end: SchemaVal

  19. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  20. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  21. val failedVendorQualityChecks: SchemaVal

  22. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  23. val firstOfPair: SchemaVal

  24. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  25. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  26. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  27. val mapq: SchemaVal

  28. val mateAlignmentStart: SchemaVal

  29. val mateContig: SchemaVal

  30. val mateMapped: SchemaVal

  31. val mateNegativeStrand: SchemaVal

  32. final def maxId: Int

    Definition Classes
    Enumeration

  33. val mismatchingPositions: SchemaVal

  34. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  35. var nextId: Int

    Attributes
    protected
    Definition Classes
    Enumeration

  36. var nextName: Iterator[String]

    Attributes
    protected
    Definition Classes
    Enumeration

  37. final def notify(): Unit

    Definition Classes
    AnyRef

  38. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  39. val origQual: SchemaVal

  40. val primaryAlignment: SchemaVal

  41. val properPair: SchemaVal

  42. val qual: SchemaVal

  43. val readMapped: SchemaVal

  44. val readName: SchemaVal

  45. val readNegativeStrand: SchemaVal

  46. val readPaired: SchemaVal

  47. def readResolve(): AnyRef

    Attributes
    protected
    Definition Classes
    Enumeration

  48. val recordGroupDescription: SchemaVal

  49. val recordGroupFlowOrder: SchemaVal

  50. val recordGroupId: SchemaVal

  51. val recordGroupKeySequence: SchemaVal

  52. val recordGroupLibrary: SchemaVal

  53. val recordGroupName: SchemaVal

  54. val recordGroupPlatform: SchemaVal

  55. val recordGroupPlatformUnit: SchemaVal

  56. val recordGroupPredictedMedianInsertSize: SchemaVal

  57. val recordGroupRunDateEpoch: SchemaVal

  58. val recordGroupSample: SchemaVal

  59. val recordGroupSequencingCenter: SchemaVal

  60. val recordSchema: Schema

    Definition Classes
    FieldEnumeration

  61. val secondOfPair: SchemaVal

  62. val secondaryAlignment: SchemaVal

  63. val sequence: SchemaVal

  64. val start: SchemaVal

  65. val supplementaryAlignment: SchemaVal

  66. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  67. def toString(): String

    Definition Classes
    Enumeration → AnyRef → Any

  68. def values: ValueSet

    Definition Classes
    Enumeration

  69. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  70. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  71. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  72. final def withName(s: String): Value

    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped