org
.
bdgenomics
.
adam
.
projections
VariantCallingAnnotationsField
object
VariantCallingAnnotationsField
extends
FieldEnumeration
Linear Supertypes
FieldEnumeration
,
Enumeration
,
Serializable
,
Serializable
,
AnyRef
,
Any
Ordering
Alphabetic
By inheritance
Inherited
VariantCallingAnnotationsField
FieldEnumeration
Enumeration
Serializable
Serializable
AnyRef
Any
Hide All
Show all
Learn more about member selection
Visibility
Public
All
Type Members
class
SchemaVal
extends
Val
with
FieldValue
Definition Classes
FieldEnumeration
class
Val
extends
Value
with
Serializable
Attributes
protected
Definition Classes
Enumeration
Annotations
@SerialVersionUID
(
-3501153230598116017L
)
abstract
class
Value
extends
Ordered
[
Value
] with
Serializable
Definition Classes
Enumeration
Annotations
@SerialVersionUID
(
7091335633555234129L
)
class
ValueSet
extends
AbstractSet
[
Value
] with
SortedSet
[
Value
] with
SortedSetLike
[
Value
,
ValueSet
] with
Serializable
Definition Classes
Enumeration
Value Members
final
def
!=
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
SchemaValue
:
SchemaVal
Attributes
protected
Definition Classes
FieldEnumeration
final
def
Value
(
i:
Int
,
name:
String
)
:
Value
Attributes
protected
Definition Classes
Enumeration
final
def
Value
(
name:
String
)
:
Value
Attributes
protected
Definition Classes
Enumeration
final
def
Value
(
i:
Int
)
:
Value
Attributes
protected
Definition Classes
Enumeration
final
def
Value
:
Value
Attributes
protected
Definition Classes
Enumeration
val
alleleCountMLE
:
SchemaVal
val
alleleFrequencyMLE
:
SchemaVal
final
def
apply
(
x:
Int
)
:
Value
Definition Classes
Enumeration
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
val
baseQRankSum
:
SchemaVal
val
clippingRankSum
:
SchemaVal
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
val
culprit
:
SchemaVal
val
downsampled
:
SchemaVal
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
val
haplotypeScore
:
SchemaVal
def
hashCode
()
:
Int
Definition Classes
AnyRef → Any
val
inbreedingCoefficient
:
SchemaVal
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
val
mapq0Reads
:
SchemaVal
final
def
maxId
:
Int
Definition Classes
Enumeration
val
mqRankSum
:
SchemaVal
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
var
nextId
:
Int
Attributes
protected
Definition Classes
Enumeration
var
nextName
:
Iterator
[
String
]
Attributes
protected
Definition Classes
Enumeration
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
val
readDepth
:
SchemaVal
val
readPositionRankSum
:
SchemaVal
def
readResolve
()
:
AnyRef
Attributes
protected
Definition Classes
Enumeration
val
recordSchema
:
Schema
Definition Classes
FieldEnumeration
val
rmsMapQ
:
SchemaVal
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
Enumeration → AnyRef → Any
val
usedForNegativeTrainingSet
:
SchemaVal
val
usedForPositiveTrainingSet
:
SchemaVal
def
values
:
ValueSet
Definition Classes
Enumeration
val
variantCallErrorProbability
:
SchemaVal
val
variantFilters
:
SchemaVal
val
variantIsPassing
:
SchemaVal
val
variantQualityByDepth
:
SchemaVal
val
vqslod
:
SchemaVal
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
withName
(
s:
String
)
:
Value
Definition Classes
Enumeration
Inherited from
FieldEnumeration
Inherited from
Enumeration
Inherited from
Serializable
Inherited from
Serializable
Inherited from
AnyRef
Inherited from
Any
Ungrouped