Finds indel targets over a set of reads.
Finds indel targets over a set of reads.
An RDD containing reads to generate indel realignment targets from.
An ordered set of indel realignment targets.
Wrapper for joinTargets(TreeSet[IndelRealignmentTarget], TreeSet[IndelRealignmentTarget]) for contexts where serialization is needed.
Wrapper for joinTargets(TreeSet[IndelRealignmentTarget], TreeSet[IndelRealignmentTarget]) for contexts where serialization is needed.
A sorted set of realignment targets. This set must be ordered ahead of the second set.
A sorted set of realignment targets.
A merged set of targets.
Joins two sorted sets of targets together.
Joins two sorted sets of targets together. Is tail call recursive.
A sorted set of realignment targets. This set must be ordered ahead of the second set.
A sorted set of realignment targets.
A merged set of targets.
This function should not be called in a context where target set serialization is needed. Instead, call joinTargets(TargetSet, TargetSet), which wraps this function.